Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_L23
(380 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 27 1.3
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 25 3.0
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 25 5.3
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 25 5.3
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 25 5.3
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 24 7.0
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 24 7.0
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 24 7.0
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 24 7.0
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 24 9.3
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 24 9.3
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 24 9.3
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 26.6 bits (56), Expect = 1.3
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +2
Query: 2 TQRCSPSYSSCQFFWSASTAGTCSLKSLVNTSNNMRISRSSGPTPGYAGKRVLSLSTLTA 181
TQR PSY + +T GT S+ N+S+N + G P + ++ S T
Sbjct: 26 TQRVRPSYELIEAPTRQATNGTGSVSGSPNSSSN-STPANQGSLPSHTNPQLYSSITRKE 84
Query: 182 PQVLWSRY 205
L+ Y
Sbjct: 85 RPELFRSY 92
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 3.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 180 HLRCYGQGTYNWKRKSQAQCSWLR 251
HL YG+ TYN + Q SW +
Sbjct: 176 HLEVYGRTTYNIVLHNSWQASWFK 199
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 24.6 bits (51), Expect = 5.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 62 GTCSLKSLVNTSNNMRISRSSGPTPGYAGKRVL 160
G + N NN + + GPTP + GK+ L
Sbjct: 97 GLVGMACTENEGNNSQFFITLGPTPEWNGKQTL 129
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 24.6 bits (51), Expect = 5.3
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +1
Query: 175 DGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPG 354
D +SGA++ V T GS+ T+ + T+G + V T+T+T I G
Sbjct: 792 DTSSGAVIVVEPTAGTVTETIVSGSIPFTSTIPAQGTTSG-TVEVVEPTAGTVTETIISG 850
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 24.6 bits (51), Expect = 5.3
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +2
Query: 44 WSASTAGTCSLKSLVNTSNNMRISRSSGPTPGYAGK-RVLSLST 172
W T LKSL NN+R+ S P + K LSL T
Sbjct: 99 WDPLQLSTARLKSLCLYRNNVRVLNISNPMTTHNAKLSGLSLDT 142
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 24.2 bits (50), Expect = 7.0
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 130 NSRVRRQAGALTINSDGTSGAMVKVPITGNENH-RLSALGSVDLT 261
NS V + G+ + +S T +PI ENH L++ GS ++
Sbjct: 1439 NSPVTKVPGSSSTSSSSTQPINSTIPINPLENHGMLNSFGSTTVS 1483
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 24.2 bits (50), Expect = 7.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 141 TPASGCSHYQL*RHL 185
TPAS SHYQL H+
Sbjct: 674 TPASELSHYQLLSHI 688
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pombe|chr
2|||Manual
Length = 967
Score = 24.2 bits (50), Expect = 7.0
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 256 LTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDKM 369
+T+ + A LA N+ G + + TH+PG G +
Sbjct: 922 ITDLKQYCATEMNLANRNMGGRLSQIISTHLPGDGQSV 959
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 24.2 bits (50), Expect = 7.0
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 103 YEDQPEQWANSRVRRQAGALTINSDGTSGAMVKVPITGN 219
YE PE + N +R A AL NS+ G+ V N
Sbjct: 227 YEQDPEGFVNPYSKRGAAALA-NSENNKGSEAGVSAKTN 264
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 23.8 bits (49), Expect = 9.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 289 AGLAYDNVNGHGATLTKTHIPG 354
A A DN+ GA+L H+PG
Sbjct: 178 AKAAIDNLVSIGASLAHVHVPG 199
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 23.8 bits (49), Expect = 9.3
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 296 WLMTT*TDTERPSQKLISLGSVTK 367
WL+ ++TE P+Q+L +L S++K
Sbjct: 192 WLLEHCSETEIPAQQLQALPSLSK 215
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 23.8 bits (49), Expect = 9.3
Identities = 13/55 (23%), Positives = 26/55 (47%)
Frame = +2
Query: 17 PSYSSCQFFWSASTAGTCSLKSLVNTSNNMRISRSSGPTPGYAGKRVLSLSTLTA 181
P YS +F+S + S+++ + ++ I R YA K + ++ L+A
Sbjct: 358 PQYSRIAYFYSYNVVYEASIQTATDGNDFANIPRYVSMVQSYALKTIDAIFELSA 412
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,523,255
Number of Sequences: 5004
Number of extensions: 27346
Number of successful extensions: 62
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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