Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_L23
         (380 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0493 - 3715677-3715907,3716675-3716861,3717631-3717818           30   0.54 
08_02_1583 + 28036125-28037030,28037411-28037656                       28   2.9  
03_04_0112 - 17375871-17376099,17377021-17377054,17377237-173774...    28   2.9  
10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022           27   3.8  
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714...    27   3.8  
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485...    27   5.0  
01_06_0996 + 33667663-33667900,33668019-33668091,33668785-336688...    27   5.0  
07_03_1164 + 24451808-24451868,24452690-24452923,24453735-244537...    27   6.6  
06_03_1025 - 26980631-26981286,26981434-26981557,26982290-269824...    27   6.6  

>07_01_0493 - 3715677-3715907,3716675-3716861,3717631-3717818
          Length = 201

 Score = 30.3 bits (65), Expect = 0.54
 Identities = 18/42 (42%), Positives = 20/42 (47%)
 Frame = +2

Query: 26  SSCQFFWSASTAGTCSLKSLVNTSNNMRISRSSGPTPGYAGK 151
           + C FF SA+T G CS K         R   SS P PG A K
Sbjct: 19  AGCGFFGSAATGGLCS-KCYKEQQPQPRHHISSAPPPGTATK 59


>08_02_1583 + 28036125-28037030,28037411-28037656
          Length = 383

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -2

Query: 154 PLAGVPWSWPTAPAD 110
           PLA V  SWPT+PAD
Sbjct: 179 PLAAVVESWPTSPAD 193


>03_04_0112 -
           17375871-17376099,17377021-17377054,17377237-17377470,
           17377636-17377705
          Length = 188

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +2

Query: 17  PSYSSCQFFWSASTAGTCSLKSLVNT 94
           PS+S C F  SAS AGT  L   V T
Sbjct: 101 PSFSGCTFPSSASAAGTTGLSPGVGT 126


>10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022
          Length = 587

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 19/46 (41%), Positives = 22/46 (47%)
 Frame = -3

Query: 264 ISEIYGAKSTEPVIFVSSYRYLDHST*GAVRVDSESTRLPAYPGVG 127
           + E+ G K  E   F S Y    H T GA  +D     LPAYPG G
Sbjct: 546 VHEVLGLKDLE---FQSLY----HFTVGAPVLDKRIMSLPAYPGPG 584


>02_05_0359 -
           28269236-28269541,28270857-28270919,28271439-28271459,
           28271660-28271716,28271789-28271874,28271982-28272039,
           28272176-28272311,28272799-28273073,28273564-28273602,
           28274052-28274143,28274422-28274454,28275041-28275088,
           28275191-28275323
          Length = 448

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 148 AGVPWSWPTAPADPHIVRCINQALQRARTG 59
           AG PW+W  +PA   + +C   A +R  TG
Sbjct: 408 AGGPWTWRESPASRAMQKC--PACKRTHTG 435


>07_01_0646 +
           4853546-4853623,4853732-4855357,4855467-4855751,
           4856131-4856277
          Length = 711

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +1

Query: 151 AGALTINSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 324
           AG  + +     G  V   + G +NH +S +G          GA TAG AY+ +N  G
Sbjct: 178 AGHSSTSISAALGMAVARDLLGKKNHVISVIGD---------GAMTAGQAYEAMNNSG 226


>01_06_0996 +
           33667663-33667900,33668019-33668091,33668785-33668841,
           33668970-33669067,33669482-33669637,33669744-33670366,
           33670484-33670560,33671551-33671805,33671950-33672067,
           33672174-33672345,33672434-33672975
          Length = 802

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 41  FWSASTA-GTCSLKSLVNTSNNMRISRSSGPT 133
           FW  ST    CS   L+   NN  +SR +GP+
Sbjct: 40  FWPRSTKWALCSEVDLIGPLNNWTLSRLTGPS 71


>07_03_1164 +
           24451808-24451868,24452690-24452923,24453735-24453768,
           24454372-24454627
          Length = 194

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 17  PSYSSCQFFWSASTAGTCSLKSLVNTSNNM 106
           PS S C F  SAS AGT +  ++  T+  M
Sbjct: 98  PSVSGCSFPASASGAGTSTTPTMGGTTGTM 127


>06_03_1025 -
           26980631-26981286,26981434-26981557,26982290-26982426,
           26983220-26983355,26983615-26983922,26985159-26985207
          Length = 469

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +1

Query: 154 GALTINSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 324
           G     SD  + A V  P    E+ ++   G+V++    +L AAT     D + G G
Sbjct: 23  GLRKCKSDSKATASVLAPPKDVEDLQIEGYGNVNIFTYNELRAATKNFRPDQILGEG 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,361,536
Number of Sequences: 37544
Number of extensions: 200449
Number of successful extensions: 436
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)