Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_L23
         (380 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88314-8|AAF99888.1|  249|Caenorhabditis elegans Pharyngeal glan...    29   0.85 
Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical pr...    27   3.4  
AF025466-2|AAB71033.1|  261|Caenorhabditis elegans Hypothetical ...    27   4.5  
AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical...    26   7.9  

>U88314-8|AAF99888.1|  249|Caenorhabditis elegans Pharyngeal gland
           toxin-relatedprotein 2 protein.
          Length = 249

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 15/78 (19%)
 Frame = +2

Query: 2   TQRCSPSYSSCQFFWSASTAGTC--------------SLKSLVNTSNNMRISRSSGP-TP 136
           TQ+C  +   C  F S  T GTC              SL+S  N SN + + R+  P T 
Sbjct: 124 TQQCPKTCGRCSSFSSTPTTGTCTDLKNPKTGTSDCASLRSFCNDSNYIDLMRTQCPRTC 183

Query: 137 GYAGKRVLSLSTLTAPQV 190
           G+ G    S +T ++  V
Sbjct: 184 GFCGSSGSSSTTRSSATV 201


>Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical
           protein ZK666.7 protein.
          Length = 403

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 256 LTNQMKLGAATAGLAY--DNVNGHGATLTKTHIPGF 357
           L  +MK+  A A +AY  DNVNG    L++   PG+
Sbjct: 180 LATRMKVDVAIATVAYGQDNVNGFLRQLSQIATPGY 215


>AF025466-2|AAB71033.1|  261|Caenorhabditis elegans Hypothetical
           protein T23F4.1 protein.
          Length = 261

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 207 YNWKRKSQAQCSW 245
           Y WKRKS+++C W
Sbjct: 91  YLWKRKSRSRCEW 103


>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
            protein Y51A2D.15 protein.
          Length = 1222

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = +2

Query: 26   SSCQFFWSA-STAGTCSLKSLVNTSNNMRISRSSGPTPGYAGKRVLSLSTLTAPQVLWSR 202
            S+C    S+ ST   C L    + S    +   S P+P  +  R LSL     P +L   
Sbjct: 1145 STCSVSTSSDSTPDECPLHGSRSFSKISALKIQSSPSPSSSFSRFLSLRRTAKPSLLQGA 1204

Query: 203  Y 205
            Y
Sbjct: 1205 Y 1205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,512,287
Number of Sequences: 27780
Number of extensions: 158135
Number of successful extensions: 334
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)