Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_L20
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 287 6e-79
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 153 2e-38
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 150 1e-37
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 99 5e-22
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 27 1.8
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 27 2.4
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 26 3.2
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 26 4.2
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma... 26 4.2
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 25 5.6
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 25 7.3
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 9.7
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 25 9.7
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 25 9.7
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 25 9.7
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 287 bits (705), Expect = 6e-79
Identities = 130/183 (71%), Positives = 156/183 (85%)
Frame = +2
Query: 2 TLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQ 181
TLS+HQLVEN+DET+CIDNEAL I TLK+ +P+Y DLNHLVS M+GVTT RFPG+
Sbjct: 186 TLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGE 245
Query: 182 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACEP 361
LN+DLRKLAVNMVPFPRLHFFM GFAPL + GS ++A++VPELTQQMFDA NMM A +P
Sbjct: 246 LNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADP 305
Query: 362 RHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTXVCDIPTRGLKMAA 541
RHGRYLTVAA+FRG++SMKEVDEQ+ ++Q KNS+YFVEWIP+NV VC +P + LKM+A
Sbjct: 306 RHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSA 365
Query: 542 TFI 550
TFI
Sbjct: 366 TFI 368
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 153 bits (370), Expect = 2e-38
Identities = 64/171 (37%), Positives = 104/171 (60%)
Frame = +2
Query: 5 LSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQL 184
L+ H ++N+D T+ +DNEA YDIC R L + PTY +LN L++ +S +T LRF G L
Sbjct: 193 LTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSL 252
Query: 185 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACEPR 364
N DL + N+VP+PR+HF + ++P+ S + + +V E+T Q F+ N M C+PR
Sbjct: 253 NVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPR 312
Query: 365 HGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTXVCDIP 517
GRY+ ++RG + ++V + +I+++ + FV+W P K +C P
Sbjct: 313 TGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEP 363
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 150 bits (364), Expect = 1e-37
Identities = 64/176 (36%), Positives = 104/176 (59%)
Frame = +2
Query: 5 LSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQL 184
L+ H ++ D T+ +DNE+ YDIC R L + P+Y +LN L++ +S +T LRF G L
Sbjct: 189 LTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSL 248
Query: 185 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACEPR 364
N DL + N+VP+PR+HF + +AP+ S + + +V E+T Q F+ N M C+PR
Sbjct: 249 NVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPR 308
Query: 365 HGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTXVCDIPTRGLK 532
GRY+ ++RG + ++V + I+ K + FV+W P K +CD P + ++
Sbjct: 309 AGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIE 364
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 98.7 bits (235), Expect = 5e-22
Identities = 49/171 (28%), Positives = 91/171 (53%), Gaps = 4/171 (2%)
Frame = +2
Query: 5 LSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQL 184
L++ +L N D +DN AL I L PT+ N LVS MS TT LR+PG +
Sbjct: 190 LALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYM 249
Query: 185 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRAL---TVPELTQQMFDAKNMMAAC 355
N DL + +++P PR HF + + P T++ ++ +A+ TV ++ +++ KN M +
Sbjct: 250 NNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSV 309
Query: 356 EP-RHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTXV 505
P + ++++ I +G +V + +L I+ + + F+ W P +++ +
Sbjct: 310 NPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVAL 360
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/53 (20%), Positives = 26/53 (49%)
Frame = +2
Query: 392 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTXVCDIPTRGLKMAATFI 550
++ + ++ + + ++NI+ N S W+PN + +P G K++ I
Sbjct: 343 VYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVSEMLI 395
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 26.6 bits (56), Expect = 2.4
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +2
Query: 17 QLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADL 196
Q+ NTD + N LY RT+ DLN SL + GV +F G + +
Sbjct: 301 QVCTNTDSSRNAGNAILYQ-AVRTIL-------DLNSDSSLRVLGVNILAKFLGNRDNNT 352
Query: 197 RKLAVNMV 220
R +A+NM+
Sbjct: 353 RYVALNML 360
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 3.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 95 VSACGSRCHRGLHC 54
VSAC CH+GL C
Sbjct: 210 VSACAFACHKGLSC 223
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 371 RYLTVAAIFRGRMSMKEVDEQMLNIQNKN--SSYFVEWIPNNVK 496
RYLT + + +++K V + +LN N++ + F+ W P K
Sbjct: 297 RYLTGKVVEQEYLTVKLVSKTLLNFSNQSLCKAVFIVWDPPGSK 340
>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 95 VSACGSRCHRGLHC 54
VSAC CH+GL C
Sbjct: 207 VSACAFSCHKGLGC 220
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +2
Query: 371 RYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPN 487
+Y+ ++F G + NI N S EW+PN
Sbjct: 29 QYIPTISVFEGSLIDNRDTLSYFNISNLEPSERSEWLPN 67
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 32 TDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVS 136
T Y + E YDIC L T LNHL+S
Sbjct: 256 TSFLYALAGELDYDICVLNLAEKGLTDDRLNHLLS 290
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 532 LQSPGRDVAHXGLHVVRDPFHEVRRVLVLN 443
LQS R + GL +V P HE+ V LN
Sbjct: 1287 LQSWSRILERYGLKLVEAPIHEIAAVGELN 1316
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 119 LNHLVSLTMSGVTTCLRFPGQLN 187
L HLV + G++ C +PG+ N
Sbjct: 331 LTHLVDAPLLGMSVCPLYPGEEN 353
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -1
Query: 541 RRHLQSPGRDVAHXGLHVVRDPFHEVRRVLVLNVKHLLIDF-LHR-HTTT 398
R +L+SP + G+ R P + + +K ++ F LH+ H+TT
Sbjct: 181 REYLRSPSTGILSKGVSSTRSPVSNTKLLKAEFIKQVISCFLLHKSHSTT 230
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 241 EMQTWEWHHVHCQLAEIRIQLTR 173
++Q E HH + + A +R+QL+R
Sbjct: 94 KLQDSEIHHRYSEFASLRVQLSR 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,246,950
Number of Sequences: 5004
Number of extensions: 45396
Number of successful extensions: 156
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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