Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_L19
         (275 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot...    97   4e-22
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote...    96   9e-22
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    26   0.86 
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    26   1.1  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    25   2.6  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    24   3.5  
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    24   4.6  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    23   6.1  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    23   6.1  
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc...    23   6.1  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    23   6.1  
SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom...    23   8.0  

>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 97.1 bits (231), Expect = 4e-22
 Identities = 42/71 (59%), Positives = 54/71 (76%), Gaps = 2/71 (2%)
 Frame = +3

Query: 66  MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVCIWSL--* 239
           M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG++ +KR+   IW     
Sbjct: 1   MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGK 60

Query: 240 RCKRTVAGGAW 272
            CK+ +AGGAW
Sbjct: 61  GCKKVLAGGAW 71


>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 95.9 bits (228), Expect = 9e-22
 Identities = 43/71 (60%), Positives = 54/71 (76%), Gaps = 2/71 (2%)
 Frame = +3

Query: 66  MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVCIW--SL* 239
           M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG+  +KR+   IW  S  
Sbjct: 1   MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGK 60

Query: 240 RCKRTVAGGAW 272
            C +T+AGGAW
Sbjct: 61  GCSKTLAGGAW 71


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 0.86
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 126 MHHNVCHIYQ-*FRPSWCVWPFLVNLSN 46
           MHH  CH++Q  F   W  +P  VN+ N
Sbjct: 479 MHHYACHVWQKLFETQWYEYP--VNVMN 504


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 171 KYTCSFCGKDAMKRSCVCIWSL*RCKRTVA 260
           KY C  CG     + C  I S  RC +  A
Sbjct: 110 KYACQNCGTSYCSKGCEVIHSETRCMKVYA 139


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 88  SELLVNM--AHVMVHLYVKWSKRWK*LNMRNTLAHSAARMP*NVHVYASGHCNGA 246
           S+LLV+     + VH+YVK SK W+ ++  +  + S       +H       NGA
Sbjct: 429 SQLLVSSDGETLYVHIYVKSSKSWRCMSQTHVSSISNLVWLNELHQLLFSTSNGA 483


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
 Frame = -1

Query: 206 HGILAAE*ASVFRMLSYFHLFDHFT*RCTITCAIFTSNSDL--LGAFGHF*LTCLTLVPY 33
           H ++  + ++ F    Y H+F H     +I C       DL  L  +  F      + PY
Sbjct: 552 HAMIRTD-SAAFHSRRYIHIFHHIQFMLSIPCVAEIVREDLKFLKQYADFFNLFQGMCPY 610

Query: 32  SSAAGIH 12
           + A   H
Sbjct: 611 TRAVSQH 617


>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 268

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 189 CGKDAMKRSCVCIW 230
           CG D    SC+C W
Sbjct: 37  CGHDQFDYSCICRW 50


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 12/50 (24%), Positives = 21/50 (42%)
 Frame = -3

Query: 246 CTVTVTRCIHMNVSWHPCRRMSKCISHVELLPSF*PFYVKMHHNVCHIYQ 97
           C + V  C+     W P    S+ + + ELL      Y  ++H +   Y+
Sbjct: 232 CYLKVKACVKDKPEWQPISLKSELVPNEELLGE---EYSHIYHTISKKYE 278


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 84  SWCVWPFLVNLSNPRAVF 31
           SW  W     LSNP++VF
Sbjct: 158 SWRFWRLYSVLSNPKSVF 175


>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 211 RFMASLPQNEQVYFA 167
           RF+ SLPQ E+V FA
Sbjct: 248 RFVQSLPQKEKVPFA 262


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 214 ERFMASLPQNEQVYFA 167
           ERF  ++PQ++QV FA
Sbjct: 273 ERFAVAVPQSKQVSFA 288


>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 141 PFYVKMHHNVCHIYQ 97
           PFYVKM H  C +++
Sbjct: 156 PFYVKMEHQ-CKVFE 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,246,065
Number of Sequences: 5004
Number of extensions: 24077
Number of successful extensions: 60
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)