Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_L19
         (275 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical ...   117   1e-27
Z70287-1|CAA94302.3|  294|Caenorhabditis elegans Hypothetical pr...    31   0.15 
U53154-3|AAC25852.1|  346|Caenorhabditis elegans Hypothetical pr...    28   1.1  
Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical pr...    26   4.4  
AL032639-10|CAA21634.1|  108|Caenorhabditis elegans Hypothetical...    26   4.4  
AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin pro...    26   4.4  
Z81509-5|CAI79166.1|  150|Caenorhabditis elegans Hypothetical pr...    25   5.8  

>AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical
           protein Y48B6A.2 protein.
          Length = 91

 Score =  117 bits (281), Expect = 1e-27
 Identities = 51/70 (72%), Positives = 59/70 (84%)
 Frame = +3

Query: 66  MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVCIWSL*RC 245
           MAKRTKKVGI GKYGTRYGASLRKM KK+EV QH++YTCSFCGK+AMKR    IW+  +C
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASLRKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKC 60

Query: 246 KRTVAGGAWV 275
            + VAGGA+V
Sbjct: 61  HKVVAGGAYV 70


>Z70287-1|CAA94302.3|  294|Caenorhabditis elegans Hypothetical
           protein R09E10.1 protein.
          Length = 294

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 219 HMNVSWHPCRRMSKCISHVELLPSF*PFYV 130
           ++N   +  RR SKC   VEL PS+  FY+
Sbjct: 261 YVNAKIYASRRNSKCFRRVELFPSYIRFYL 290


>U53154-3|AAC25852.1|  346|Caenorhabditis elegans Hypothetical
           protein C33G8.8 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = -3

Query: 225 CIHMNVSWHPCR--RMSKCIS 169
           C+H   S HPCR  RM KCI+
Sbjct: 42  CLHRLPSSHPCRHCRMEKCIA 62


>Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical
           protein F33C8.1a protein.
          Length = 1271

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 222 IHMNVSWHPCRRMSKCISHVELLPSF 145
           I  + +W+P  + S C+S  +L P+F
Sbjct: 731 ISPHCTWYPIDKASPCVSKEDLSPAF 756


>AL032639-10|CAA21634.1|  108|Caenorhabditis elegans Hypothetical
           protein Y38F1A.9 protein.
          Length = 108

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 108 GTRYGASLRKMVKKMEVTQHAK 173
           G RY + ++KMV K  VT H K
Sbjct: 46  GDRYVSKIKKMVGKFTVTLHIK 67


>AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin
           protein.
          Length = 1329

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 222 IHMNVSWHPCRRMSKCISHVELLPSF 145
           I  + +W+P  + S C+S  +L P+F
Sbjct: 731 ISPHCTWYPIDKASPCVSKEDLSPAF 756


>Z81509-5|CAI79166.1|  150|Caenorhabditis elegans Hypothetical
           protein F21A3.8 protein.
          Length = 150

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 265 PPATVLLHRYSDQMHTHERFMASLPQNEQ 179
           PPA+      S   HTH++++   P +EQ
Sbjct: 54  PPASYHTEHQSTPSHTHKKYIDPEPYSEQ 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,057,132
Number of Sequences: 27780
Number of extensions: 141639
Number of successful extensions: 355
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)