Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_L18
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    30   0.16 
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    29   0.22 
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    25   4.7  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   4.7  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   6.1  

>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 29.9 bits (64), Expect = 0.16
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 94  GNLSTGRSITLLSAKMKDPWYS*DRKRLTRANTNASLK 207
           G+L  G    LL  +   PWY  D  R+TRA     L+
Sbjct: 458 GDLHNGHYYALLKTEKDGPWYKYDDTRVTRATLREVLE 495


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 29.5 bits (63), Expect = 0.22
 Identities = 26/98 (26%), Positives = 42/98 (42%)
 Frame = +3

Query: 24  NPTVLECLIEGNDQGVKYSWQKDGKSFNWQEHNAALRKDEGSLVFLRPQASDEGQYQCFA 203
           NP V    + GN+Q   +S   D  ++N    NA +         LR  + +       +
Sbjct: 534 NPRVTRFNV-GNEQ---FSNNIDNNNYNQPYANATMNNSRR----LRTPSGERSMRADLS 585

Query: 204 ETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQ 317
           ++PA   S  V   R+   + SP+ T +K  + G PFQ
Sbjct: 586 QSPASYDSLNVPKHRRRQSLFSPSSTKKK--LSGSPFQ 621


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 266 IASEDTRENANRRQAFPIGLCAAERL 343
           I + DT   A RRQ F   L AAER+
Sbjct: 474 IFNNDTLSRAERRQRFRQSLRAAERI 499


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 240 SFRKTYLIASPAKTHEKTP 296
           +FRKTYL AS A  H   P
Sbjct: 585 AFRKTYLFASNAGIHINAP 603


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +1

Query: 73  STPGKRMGNLSTGRSITLLSAKMKDPWYS*DRKRLTRA-NTNASLKPQPVLPARG 234
           + P  R+G  ++ RS   L+  MKDP     R   T A   N    P P  P  G
Sbjct: 85  AVPTVRLGRSTSSRSRNSLNLDMKDPSEKPRRSLPTAAGQNNIGSPPTPPGPFPG 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,798,939
Number of Sequences: 5004
Number of extensions: 36901
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)