Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_L14
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associat...   103   2e-23
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    28   0.93 
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   5.0  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.6  

>SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associated
           complex beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score =  103 bits (248), Expect = 2e-23
 Identities = 60/136 (44%), Positives = 78/136 (57%), Gaps = 8/136 (5%)
 Frame = +3

Query: 3   RIGGKGTPRRKKKVVHVTA--ATDDXXXXXXXXXXXVNTIPGIEEVNMIKDDGTVIHFNN 176
           RIGGKGTPRRK K    +A  A DD           +  + GI+EVNM K+DG VI+F  
Sbjct: 14  RIGGKGTPRRKVKKPSKSAMSAADDKKVQGALKKLNMQNLAGIQEVNMFKEDGGVINFRA 73

Query: 177 PKAQASLAANTFAITGHGENKQIAEMLPGILSQLGPEGLNQLKRLASSV---AAPKPLD- 344
           P   +SL   T AI G  E K ++E+LPGIL+ LGPE L  L+++A  +      K  D 
Sbjct: 74  PTVHSSLPNETTAIYGKAEEKTLSEILPGILNNLGPESLTALRQMAEQLKVSEGEKGADA 133

Query: 345 --EDDEVPNLVGNFDE 386
             +D E+P+LV  FDE
Sbjct: 134 QADDGEIPDLVEKFDE 149


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 29  AQEEGCTRYSGNRR*EIAIVSQKIVSEHHSWH*RGQYD 142
           A EE  T   GN    +   S+K  S +HS H +G YD
Sbjct: 391 AWEEDLTPQYGNLTTRLLFASKKYWSRNHSSHSQGNYD 428


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
 Frame = +3

Query: 108 NTIPGIEEVNMIKDDGTVIH---FNNPKAQASLAANTFAITGHGENKQIAEMLPGILSQL 278
           ++IP ++++  IK+   V H    N  K Q  ++A+   + G    K+ A  +       
Sbjct: 326 SSIPNVDDIRSIKNSWKVFHDEKLNELKKQVEISASAAQLNGLYPQKKRA-FVSHFSQNR 384

Query: 279 GPEGLNQLKRLASSVAAPKPLDEDDE 356
            P   + + +  SS  + +P +  DE
Sbjct: 385 KPYSQSDISKAQSSSFSEEPSNIYDE 410


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 169  KCITVPSSFIILTSSMPGMVFTDNFLRDDCNF 74
            +C+ +  SFI+L  S    + T+NFL     F
Sbjct: 1238 ECLPIKESFIVLLGSCIKQLKTENFLEYKVTF 1269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,243,511
Number of Sequences: 5004
Number of extensions: 39101
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)