Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_L14
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0067 - 538929-539143,539306-539344,539579-539635,539727-53... 121 4e-28
10_08_0411 - 17725661-17725842,17726066-17726104,17726379-177264... 118 4e-27
03_06_0698 + 35608666-35608709,35608810-35608958,35609493-356095... 86 2e-17
04_04_0677 + 27195264-27195291,27196034-27196271,27196350-271965... 30 1.3
05_03_0564 - 15502458-15503303,15503394-15503474,15503572-155036... 29 2.9
05_03_0563 - 15493570-15494415,15494506-15494586,15494684-154947... 29 2.9
05_03_0562 - 15484733-15485578,15485669-15485749,15485847-154858... 29 2.9
03_02_0527 + 9187152-9187514 27 8.9
>03_01_0067 -
538929-539143,539306-539344,539579-539635,539727-539875,
540298-540365,542009-542093,542185-542246,542612-542700,
543034-543088,544127-544252,544477-544576,544697-545499
Length = 615
Score = 121 bits (292), Expect = 4e-28
Identities = 66/143 (46%), Positives = 88/143 (61%), Gaps = 13/143 (9%)
Frame = +3
Query: 3 RIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKDDGTVIHFNNPK 182
R GGKG+ RRKKK VH T TDD VN IPGIEEVN+ KDD VI F NPK
Sbjct: 454 RTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRVGVNNIPGIEEVNIFKDD-VVIQFQNPK 512
Query: 183 AQASLAANTFAITGHGENKQIAEMLPGILSQLGPEGLNQLKRLA-----------SSVAA 329
QAS+ ANT+ ++G + K++ ++LP I++QLGP+ L+ L+RLA + +A
Sbjct: 513 VQASIGANTWVVSGTPQTKKLQDLLPTIINQLGPDNLDNLRRLAEQFQKQVPGAEAGASA 572
Query: 330 PKPLDEDDEVPNLV--GNFDEAS 392
D+DD+VP LV F+EA+
Sbjct: 573 GNAQDDDDDVPELVPGETFEEAA 595
>10_08_0411 -
17725661-17725842,17726066-17726104,17726379-17726435,
17726524-17726672,17727195-17727262,17727796-17727798
Length = 165
Score = 118 bits (284), Expect = 4e-27
Identities = 57/112 (50%), Positives = 73/112 (65%)
Frame = +3
Query: 3 RIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKDDGTVIHFNNPK 182
R GGKG+ RRKKK VH T TDD VNTIPGIEEVN+ KDD VI F NPK
Sbjct: 15 RTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRVGVNTIPGIEEVNIFKDD-VVIQFLNPK 73
Query: 183 AQASLAANTFAITGHGENKQIAEMLPGILSQLGPEGLNQLKRLASSVAAPKP 338
QAS+ ANT+ ++G + K++ ++LP I++QLGP+ L+ L+RLA P
Sbjct: 74 VQASIGANTWVVSGTPQTKKLQDLLPSIINQLGPDNLDNLRRLAEQFQKQAP 125
>03_06_0698 +
35608666-35608709,35608810-35608958,35609493-35609531,
35610024-35610163,35611130-35611244,35611281-35611399,
35611413-35611979
Length = 390
Score = 86.2 bits (204), Expect = 2e-17
Identities = 58/140 (41%), Positives = 73/140 (52%), Gaps = 11/140 (7%)
Frame = +3
Query: 3 RIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKDDGTVIHFNNPK 182
R GGKGT RRKKK VH T TDD VNTIP IEEVN+ KDD VI F NP
Sbjct: 6 RTGGKGTVRRKKKAVHKTGTTDDKRLQSTLKRVGVNTIPAIEEVNIFKDD-LVIQFVNP- 63
Query: 183 AQASLAANTFAITGHGENKQIAEMLPGILSQLGPEGLNQLKRL---------ASSVAAPK 335
K++ ++LPGI++QLGP+ + LKR+ A+ A
Sbjct: 64 ------------------KELQDVLPGIINQLGPDNMEHLKRIAEEMQKQVAAAGATAQA 105
Query: 336 PLDEDDEVPNLV--GNFDEA 389
+ DD+VP LV NF+E+
Sbjct: 106 KEENDDDVPELVPGENFEES 125
>04_04_0677 +
27195264-27195291,27196034-27196271,27196350-27196500,
27196578-27196972,27197270-27197339,27197414-27197696,
27197972-27198297,27198409-27199368
Length = 816
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -2
Query: 121 PGMVFTDNFLRDDCNFLSSVAAVTCTTFFLRLGVPLPPMR 2
PG+VF + RD FL +V V +GVP PP R
Sbjct: 670 PGLVFDAGY-RDYLQFLCAVPGVDDAAVLRAVGVPCPPSR 708
>05_03_0564 -
15502458-15503303,15503394-15503474,15503572-15503620,
15503786-15503828,15504576-15504633,15504720-15504858,
15504980-15505107
Length = 447
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 285 EGLNQLKRLASSVAAPKPLDEDDEVPNLVGNFDEA 389
EG + + A +P+ DDE NLV NF EA
Sbjct: 180 EGFGGMGGMGGRAARNRPMQGDDEAYNLVLNFKEA 214
>05_03_0563 -
15493570-15494415,15494506-15494586,15494684-15494732,
15494898-15494940,15495688-15495745,15495832-15495970,
15496092-15496219
Length = 447
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 285 EGLNQLKRLASSVAAPKPLDEDDEVPNLVGNFDEA 389
EG + + A +P+ DDE NLV NF EA
Sbjct: 180 EGFGGMGGMGGRAARNRPMQGDDEAYNLVLNFKEA 214
>05_03_0562 -
15484733-15485578,15485669-15485749,15485847-15485895,
15486061-15486103,15486851-15486908,15486995-15487133,
15487255-15487382
Length = 447
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 285 EGLNQLKRLASSVAAPKPLDEDDEVPNLVGNFDEA 389
EG + + A +P+ DDE NLV NF EA
Sbjct: 180 EGFGGMGGMGGRAARNRPMQGDDEAYNLVLNFKEA 214
>03_02_0527 + 9187152-9187514
Length = 120
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = -3
Query: 366 GLVPHRLRLMVLARQR 319
GLV HRL+L+V+AR+R
Sbjct: 50 GLVHHRLKLLVIARRR 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,022,961
Number of Sequences: 37544
Number of extensions: 271514
Number of successful extensions: 601
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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