Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_L13
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...   109   3e-25
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    58   1e-09
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    30   0.31 
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    29   0.41 
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    27   1.7  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    27   2.2  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    26   3.8  
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    26   5.1  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    25   6.7  
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    25   8.8  
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   8.8  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    25   8.8  

>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score =  109 bits (262), Expect = 3e-25
 Identities = 46/94 (48%), Positives = 71/94 (75%)
 Frame = +2

Query: 227 SNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISALALLKTVMHARSGGTLEVMGLLL 406
           + +++++R+D+++++  +   PW+ DP FF+ +KISA+ALLK + H   G  LEVMG + 
Sbjct: 3   NQLENVFRFDEEKERAKIRESPWKHDPEFFRSVKISAVALLKMLRHVSQGMPLEVMGYVQ 62

Query: 407 GKVDANTMIVMDSFALPVEGTETRVNAQAQAYEY 508
           GKV+  ++I++DSFALPVEGTETRVNA  +A EY
Sbjct: 63  GKVEGASLIILDSFALPVEGTETRVNAHEEAQEY 96



 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 24/33 (72%), Positives = 25/33 (75%)
 Frame = +3

Query: 519 YIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDV 617
           Y    K V RHEN IGWYHSHP YGCWLSG+DV
Sbjct: 100 YHTLCKSVYRHENVIGWYHSHPNYGCWLSGVDV 132


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 19/33 (57%), Positives = 26/33 (78%)
 Frame = +3

Query: 522 IEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVS 620
           ++  KQ GR E  +GWYHSHPG+GCWLS +D++
Sbjct: 95  MDMLKQTGRPEMVVGWYHSHPGFGCWLSSVDIN 127



 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
 Frame = +2

Query: 323 IKISALALLKTVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNA 487
           + IS+LALLK + H R G  +EVMGL+LG+ VD  T+ V+D FA+P  GT   V A
Sbjct: 30  VYISSLALLKMLRHGRHGTPMEVMGLMLGEFVDDFTVRVVDVFAMPQSGTGVSVEA 85


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = +2

Query: 338 LALLKTVMHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTS 517
           L+ + +   +  G    V+G+LLG+ + + + V +S+A+P E  E   +     + +M S
Sbjct: 25  LSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWFLDHNFMES 84

Query: 518 I 520
           +
Sbjct: 85  M 85



 Score = 26.6 bits (56), Expect = 2.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 525 EAAKQVGRHENAIGWYHSHP 584
           E  K++  +E  +GWYH+ P
Sbjct: 87  EMFKKINANEKLVGWYHTGP 106


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 561 IGWYHSHPGYGCWLSGIDV 617
           +GW H+HP   C++S +D+
Sbjct: 337 LGWIHTHPTQTCFMSSVDL 355


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 351 FKSARAEILISLKKCGSFSHGFAARISCCCFLSY 250
           FK A A+ +I L+   S+SH F    + CC L +
Sbjct: 344 FKQA-ADAIIELEDLNSWSHAFYRYFAGCCLLQH 376


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 478 TSFSTFYRESKRVHNNHSVCVN 413
           TSFS     SK  ++NH  CVN
Sbjct: 404 TSFSPLKNSSKSPNDNHETCVN 425


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -3

Query: 481 DTSFSTFYRESKRVHNNHSVCVNFTQEQSHNF*SSTRS--GVHYRFQKC 341
           D+++S  +   KR H +     +    QSH   SST S   V YR  +C
Sbjct: 425 DSNYSDHHNNDKRAHVSRRHSTSRKIAQSHTGSSSTSSAANVRYRCTEC 473


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 282 ARISCCCFLSYLYIS 238
           A + CCCF + LYI+
Sbjct: 190 ANLGCCCFCTILYIA 204


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 146 TMASTSADSQSNIAQKTWVMANNMEIVSNVDDIYRYDKKQQ 268
           T+  TS + +  +AQ T++      +VSNV+  +RY +  Q
Sbjct: 215 TVTRTS-EVRPELAQGTFICEECHTVVSNVEQAFRYTEPTQ 254


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -1

Query: 276 ISCCCFLSYLYIS-STLDTISILFA 205
           +S C FLS L+IS S  +++ ILFA
Sbjct: 298 VSSCFFLSSLFISPSNKESLVILFA 322


>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 430

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 328 NLGSRTFENGNARPIW 375
           +L +RTFENGN  P+W
Sbjct: 142 SLPARTFENGNI-PVW 156


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -3

Query: 349 QKCESRDFDIFEKMWIFLPW 290
           Q+   +++ ++EK WIF+P+
Sbjct: 79  QRHNKQEYVVYEKNWIFVPY 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,633
Number of Sequences: 5004
Number of extensions: 52436
Number of successful extensions: 170
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)