Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_L13
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1418 + 33428527-33428895,33429206-33429280,33429697-334299... 140 8e-34
05_04_0078 + 17725931-17726057,17726128-17726305,17726942-177270... 60 1e-09
01_01_1151 + 9165454-9165580,9165658-9165835,9167256-9167337,916... 60 1e-09
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157... 38 0.006
01_03_0156 + 13279354-13279479,13279722-13279790,13280102-132802... 31 0.56
01_06_0147 + 26997641-26997688,26997783-26997857,26997966-269980... 31 0.97
01_05_0018 - 17208358-17208367,17208485-17208537,17209321-172093... 31 0.97
08_01_0495 - 4309816-4310592 30 1.3
09_03_0137 + 12667763-12667930,12668715-12668779,12668879-126689... 30 1.7
11_04_0281 + 15733505-15733647,15734366-15734443,15734835-157350... 29 3.9
09_04_0476 - 17922072-17922469,17922546-17923241,17923405-179235... 28 6.9
01_05_0504 + 22781737-22781799,22782033-22782287,22783652-22784077 28 6.9
04_04_0479 - 25524753-25525426,25525736-25525819,25526255-255264... 27 9.1
>04_04_1418 +
33428527-33428895,33429206-33429280,33429697-33429978,
33430058-33430205,33430309-33430388,33431238-33431318,
33431416-33431514
Length = 377
Score = 140 bits (339), Expect = 8e-34
Identities = 66/114 (57%), Positives = 86/114 (75%), Gaps = 4/114 (3%)
Frame = +2
Query: 182 IAQKTWVMANNMEIVSN----VDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISALALL 349
+A++TW + NN+ ++ +D IYRYD+ Q + KPW DPH F+ KISALALL
Sbjct: 1 MARQTWELENNIPAAASDPDALDAIYRYDEAAQARVQQEKPWANDPHPFRRAKISALALL 60
Query: 350 KTVMHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYM 511
K V+HAR+GGT+EVMGL+ GK + + ++VMD+FALPVEGTETRVNAQA AYEYM
Sbjct: 61 KMVVHARAGGTIEVMGLMQGKCEGDAIVVMDAFALPVEGTETRVNAQADAYEYM 114
Score = 62.1 bits (144), Expect = 3e-10
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +3
Query: 543 GRHENAIGWYHSHPGYGCWLSGIDVS 620
GR EN +GWYHSHPGYGCWLSGIDVS
Sbjct: 150 GRLENVVGWYHSHPGYGCWLSGIDVS 175
>05_04_0078 +
17725931-17726057,17726128-17726305,17726942-17727023,
17728500-17728676,17728763-17728930,17729028-17729219
Length = 307
Score = 60.5 bits (140), Expect = 1e-09
Identities = 20/33 (60%), Positives = 27/33 (81%)
Frame = +3
Query: 522 IEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVS 620
++ KQ GR E +GWYHSHPG+GCWLSG+D++
Sbjct: 94 LDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDIN 126
Score = 55.2 bits (127), Expect = 4e-08
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +2
Query: 317 KDIKISALALLKTVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQA 493
+ + IS+LALLK + H R+G +EVMGL+LG+ VD T+ V+D FA+P GT V A
Sbjct: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEAVD 86
Query: 494 QAYE 505
++
Sbjct: 87 HVFQ 90
>01_01_1151 +
9165454-9165580,9165658-9165835,9167256-9167337,
9167907-9168083,9168174-9168341,9168466-9168657
Length = 307
Score = 60.5 bits (140), Expect = 1e-09
Identities = 20/33 (60%), Positives = 27/33 (81%)
Frame = +3
Query: 522 IEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVS 620
++ KQ GR E +GWYHSHPG+GCWLSG+D++
Sbjct: 94 LDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDIN 126
Score = 55.2 bits (127), Expect = 4e-08
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +2
Query: 317 KDIKISALALLKTVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQA 493
+ + IS+LALLK + H R+G +EVMGL+LG+ VD T+ V+D FA+P GT V A
Sbjct: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEAVD 86
Query: 494 QAYE 505
++
Sbjct: 87 HVFQ 90
>07_01_0213 -
1573315-1573485,1573583-1573765,1573858-1574046,
1574182-1574263,1574315-1574421,1575086-1575161,
1575457-1575637,1575711-1575828
Length = 368
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Frame = +2
Query: 329 ISALALLKTVMHARSGGTLEVMGLLLG-KVDANTMIVMDSFALP 457
+S LALLK ++HA + MG++LG +VD ++ V+D+F LP
Sbjct: 28 VSPLALLKILVHAARDSPVAAMGVILGEEVDGFSVRVVDAFPLP 71
>01_03_0156 +
13279354-13279479,13279722-13279790,13280102-13280272,
13280358-13280464,13281332-13281437,13281540-13281586,
13283429-13283747,13283917-13284006,13284095-13284157,
13284303-13284377,13285379-13285441,13286677-13286700,
13286926-13286978,13287687-13287861
Length = 495
Score = 31.5 bits (68), Expect = 0.56
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 561 IGWYHSHPGYGCWLSGIDV 617
+GW H+HP C+LS ID+
Sbjct: 387 LGWIHTHPTQSCFLSSIDL 405
>01_06_0147 +
26997641-26997688,26997783-26997857,26997966-26998052,
26998566-26998622,26998867-26998959,26999528-26999600,
26999830-26999905,27000217-27000280,27000951-27000980,
27001251-27001367,27002742-27002782,27002870-27003176,
27003279-27003368,27003479-27003541,27003678-27003752,
27003922-27003984,27004714-27004784,27004885-27005068
Length = 537
Score = 30.7 bits (66), Expect = 0.97
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 564 GWYHSHPGYGCWLSGIDV 617
GW H+HP C+LS ID+
Sbjct: 429 GWIHTHPSQTCFLSSIDL 446
>01_05_0018 -
17208358-17208367,17208485-17208537,17209321-17209383,
17209971-17210045,17210090-17210104,17210983-17211045,
17211129-17211218,17211396-17211714,17211814-17211860,
17211949-17212054,17212539-17212592,17212806-17212912,
17212996-17213160,17213383-17213476,17213572-17213636,
17213841-17213969
Length = 484
Score = 30.7 bits (66), Expect = 0.97
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 561 IGWYHSHPGYGCWLSGIDV 617
+GW H+HP C+LS ID+
Sbjct: 439 LGWIHTHPTQTCFLSSIDL 457
>08_01_0495 - 4309816-4310592
Length = 258
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 265 TTRYPCCEAMGERSTFFQRYQNLGSRTFENG 357
TTR+ C +A G++ F QR++ L RTF G
Sbjct: 23 TTRHGCLQASGDQQDFSQRFR-LARRTFHLG 52
>09_03_0137 +
12667763-12667930,12668715-12668779,12668879-12668954,
12669142-12669339,12669716-12669795,12670670-12670913,
12671061-12671162,12671243-12671305,12671550-12671627,
12671905-12671967,12672163-12672209,12672328-12672496
Length = 450
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +3
Query: 522 IEAAKQVGRHENAIGWYHSHPGYGCWLSGIDV 617
++ +Q+G + +GW H+HP C++S +D+
Sbjct: 342 LDIFEQLGSPSH-LGWIHTHPTQECFMSSVDL 372
>11_04_0281 +
15733505-15733647,15734366-15734443,15734835-15735077,
15735868-15736012,15736234-15736293,15736376-15736471,
15736651-15737067,15737824-15737964,15738043-15738213,
15738394-15738651,15738741-15738889,15739060-15739557,
15740147-15740420,15740631-15740696,15740891-15741057,
15741413-15741497,15741673-15741732
Length = 1016
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = +3
Query: 48 DSYKTRTGVSIILGVSKSRLSNINLFTLINLTAQWHQQVLIHSQILLKKPG 200
+ Y R S+I SKS LSN N F N T++ + L SQ L G
Sbjct: 279 NEYLERESTSLIADASKSGLSNEN-FASNNYTSRSYSSSLTQSQYLRSSNG 328
>09_04_0476 -
17922072-17922469,17922546-17923241,17923405-17923569,
17923670-17924105,17924314-17924739
Length = 706
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 427 YDCYGLVCSPCRRY*NSCQCTSSSLRIYDQHILKQQNRWAVMRMPLVGITV 579
Y C GL + Y C C ++ D + Q+N+ + MP+VG +V
Sbjct: 298 YPCAGLCQNTMGGY--DCSCHQGQHKVEDVCVPDQKNQKSSWEMPVVGASV 346
>01_05_0504 + 22781737-22781799,22782033-22782287,22783652-22784077
Length = 247
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 228 PMWTIYTDMTRSNNKISLLRSHGRKIHIFSKISKSRLS 341
P +YT +T ISLL +G +I + + + K +LS
Sbjct: 143 PSGKLYTRITILTTLISLLEKYGLEIQLIATVIKEKLS 180
>04_04_0479 -
25524753-25525426,25525736-25525819,25526255-25526483,
25526910-25527357,25528462-25528569,25528681-25528806,
25528887-25528981,25529062-25529147,25529253-25529408,
25529523-25529766
Length = 749
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 227 SNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISALALLKT-VMHARSGGTLEVMGL 400
SNV D+ D DI K W+ + F K++++ + T V++ S L V G+
Sbjct: 593 SNVYDLVFIDAYDGDDIFPRKLWDAEGTFLKNLEMKVHPVHGTVVVNLHSDSELSVAGV 651
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,073,671
Number of Sequences: 37544
Number of extensions: 322302
Number of successful extensions: 775
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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