Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_L13
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signaloso...   162   2e-40
U00032-7|AAA50633.1|  319|Caenorhabditis elegans Hypothetical pr...    61   7e-10
AF077534-8|AAC26287.1|  312|Caenorhabditis elegans Proteasome re...    60   9e-10
Z70752-3|CAA94755.3|  654|Caenorhabditis elegans Hypothetical pr...    32   0.29 
U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF016679-7|AAB66161.1|  333|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z77659-4|CAB01163.1|  507|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AC006673-10|AAP31433.1|  361|Caenorhabditis elegans Serpentine r...    28   6.2  
Z71266-3|CAA95840.1|  292|Caenorhabditis elegans Hypothetical pr...    27   8.2  
DQ340625-1|ABC65813.1|  292|Caenorhabditis elegans chondroitin p...    27   8.2  

>U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signalosome
           subunit protein 5 protein.
          Length = 368

 Score =  162 bits (393), Expect = 2e-40
 Identities = 74/113 (65%), Positives = 90/113 (79%)
 Frame = +2

Query: 176 SNIAQKTWVMANNMEIVSNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISALALLKT 355
           S++ Q+ W   NN   V NVD I+ Y+ KQQ +I  AKPW+KDPH+FK IKISA+ALLK 
Sbjct: 10  SSVPQRNWEKENN---VQNVDSIFEYNNKQQVEIRNAKPWDKDPHYFKQIKISAIALLKM 66

Query: 356 VMHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMT 514
            MHA+ GG LE+MGLL G++DAN+ I++D FALPVEGTETRVNAQAQAYEYMT
Sbjct: 67  TMHAKRGGNLEIMGLLQGRIDANSFIILDVFALPVEGTETRVNAQAQAYEYMT 119



 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 24/34 (70%), Positives = 25/34 (73%)
 Frame = +3

Query: 519 YIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVS 620
           Y E     GR E  +GWYHSHPGYGCWLSGIDVS
Sbjct: 121 YSEMCDTEGRKEKVVGWYHSHPGYGCWLSGIDVS 154


>U00032-7|AAA50633.1|  319|Caenorhabditis elegans Hypothetical
           protein F37A4.5 protein.
          Length = 319

 Score = 60.9 bits (141), Expect = 7e-10
 Identities = 21/34 (61%), Positives = 28/34 (82%)
 Frame = +3

Query: 519 YIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVS 620
           +++  K VGR EN +GWYHSHPG+GCWLS +DV+
Sbjct: 93  HMDLLKLVGRTENVVGWYHSHPGFGCWLSSVDVN 126



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
 Frame = +2

Query: 305 PHFFKDIKISALALLKTVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRV 481
           P   + + IS+LALLK + HARSG  LEVMGL+LG  VD  T+ V D FA+P  GT   V
Sbjct: 23  PDTSETVNISSLALLKMLRHARSGIPLEVMGLMLGDFVDDYTINVTDVFAMPQSGTSVTV 82

Query: 482 NAQAQAYE 505
            +    Y+
Sbjct: 83  ESVDPVYQ 90


>AF077534-8|AAC26287.1|  312|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 11 protein.
          Length = 312

 Score = 60.5 bits (140), Expect = 9e-10
 Identities = 20/33 (60%), Positives = 27/33 (81%)
 Frame = +3

Query: 522 IEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVS 620
           ++  KQ GR E  +GWYHSHPG+GCWLSG+D++
Sbjct: 98  LDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDIN 130



 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 29/56 (51%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
 Frame = +2

Query: 323 IKISALALLKTVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNA 487
           + IS+LALLK + H R+G  +EVMGL+LG+ VD  T+ V+D FA+P  GT   V A
Sbjct: 33  VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVIDVFAMPQSGTGVSVEA 88


>Z70752-3|CAA94755.3|  654|Caenorhabditis elegans Hypothetical
           protein F25B3.3 protein.
          Length = 654

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 535 FAASIYAGHIFVSLSLCIDTSFSTFYRESKRVHNNHSVC 419
           F  +++  H ++S SL + T F  FY+E++ V    +VC
Sbjct: 40  FVDALFLSHQWLSDSLSLITHFVNFYQETRNVEQREAVC 78


>U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical
           protein T19D12.10 protein.
          Length = 455

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -3

Query: 526 SIYAGHIFVSLSLCIDTSFSTFYRESKRVHNNHSV 422
           SIY  +++  ++  + T+F  F+R+S +VH N SV
Sbjct: 187 SIY--YLYGGVAFLVTTAFFAFFRDSAQVHRNVSV 219


>AF016679-7|AAB66161.1|  333|Caenorhabditis elegans Hypothetical
           protein T28C12.6 protein.
          Length = 333

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +2

Query: 59  NANRSFNHFRSFKKSTK*Y*PFYFN*FNSTMASTSADS 172
           N N  FN FRS+        P   N F+S M STS +S
Sbjct: 167 NVNPQFNVFRSYSNDLVGSLPLCRNYFHSCMTSTSCES 204


>Z77659-4|CAB01163.1|  507|Caenorhabditis elegans Hypothetical
           protein F23B12.5 protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +1

Query: 439 GLVCSPCRRY*NSCQCTSSSLRIYDQHILKQQNRWAVMRMPLVGITVTLGTDVGF 603
           GLV    R+Y N+   +   +R+Y    L + NR A   +P +  T+ LGT V +
Sbjct: 46  GLVGQVARQYPNAAAFSIKQVRLYSSGNLPKHNRVA---LPALSPTMELGTVVSW 97


>AC006673-10|AAP31433.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein89 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -3

Query: 571 YQPMAFS*RPTCFAASIYAGHIFVSLSLCIDTSFSTFYRESKRVHNNHSVCV 416
           Y    FS   TCFA  I +G +   +    + S  +F +  K +    ++C+
Sbjct: 219 YMECVFSKLITCFALPILSGLLITEMKKSAEVSIKSFKKSRKDLTTVITICI 270


>Z71266-3|CAA95840.1|  292|Caenorhabditis elegans Hypothetical
           protein R06C7.4 protein.
          Length = 292

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 392 MGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQA 499
           +G+L   V AN+ +V+DS  L +  TET     A A
Sbjct: 151 LGILSNIVLANSQMVLDSARLSLNETETETGTSAPA 186


>DQ340625-1|ABC65813.1|  292|Caenorhabditis elegans chondroitin
           proteoglycan-3 protein.
          Length = 292

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 392 MGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQA 499
           +G+L   V AN+ +V+DS  L +  TET     A A
Sbjct: 151 LGILSNIVLANSQMVLDSARLSLNETETETGTSAPA 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,115,480
Number of Sequences: 27780
Number of extensions: 295040
Number of successful extensions: 864
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)