Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_L12
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch...    27   1.6  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    26   2.1  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    26   2.1  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    26   2.8  
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    25   3.7  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    25   6.4  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   6.4  
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    24   8.5  

>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 232

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 166 LPNALILGP*RRRERTKQGVLPNFDSL 86
           + N  I G   R+E TK    PNFD L
Sbjct: 1   MSNPTIEGDENRKENTKSNTKPNFDDL 27


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = -3

Query: 387 RCFVFFDCWTASVHDTRRIVLCILAFAIACTLTVVIRYVHIYNSPSRPV 241
           RC    DC  +   D RRI  C       C      RYVHI+ S + P+
Sbjct: 243 RCNKAEDCNLSHELDPRRIPACRYFLLGKCN-NPNCRYVHIHYSENAPI 290


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 57  SFTGSTAVGNNESKFGNT 110
           SFTGS  V NN S FG++
Sbjct: 232 SFTGSNPVQNNPSSFGSS 249


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -3

Query: 390 IRCFVFFDCWTASVHDTRRIVLCILAFAIACTLTVVIRYVHI 265
           I  F FF+ WT +V    ++ +  LA  +  T+  + + V +
Sbjct: 134 IATFCFFETWTQAVAQCIKVTVIFLAQCVKVTVIFLAQCVKV 175


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 13  TLHFSHHYFIHSFVFRLPAAPQSAIMNRSLVILLVSCV 126
           TLH S  + + +FV  LPA  Q      +L  +LV+ +
Sbjct: 61  TLHLSMLHIVFNFVSLLPAMSQFEKKQGTLACILVTVI 98


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -3

Query: 390 IRCFVFFDCWTASVHDTRRIVLCILAFAIACTLTVVIRYVHI 265
           I  F FF+ WT +V    ++ +  LA  +  T   + + V +
Sbjct: 133 IAIFCFFETWTQAVAQCIKVTVIFLAQCVKVTAISLAQCVKV 174


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 66  GSTAVGNNESKFGNTPCFVRSRRRYGPKIKAFGN 167
           G+ +  N  S FG+TP F  S   +G  +    N
Sbjct: 228 GNASSTNTTSAFGSTPAFGASTTPFGQNLSGTTN 261


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 21/82 (25%), Positives = 31/82 (37%)
 Frame = +1

Query: 130 AAAMVPRSRRSVTTNNENSSTANIKICAPQTPCAWSVYRPTGRIIDMNITNNYCECASDS 309
           AA M P S  ++  NN NS  + + I +P T  A +       + + N  N       D 
Sbjct: 28  AAYMTPPSMGALNANNSNSQLSTLTI-SPMTYLANNTSTDGSFLKERNAQNTDSLSREDY 86

Query: 310 ECQYAEDDSTGVVYRCRPAVEE 375
              +  D      Y+C   V E
Sbjct: 87  LRLWRHDALMQQQYKCAAFVGE 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,756,435
Number of Sequences: 5004
Number of extensions: 35090
Number of successful extensions: 106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)