Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_L12
         (422 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877...    29   1.2  
04_04_1563 - 34445832-34445891,34445981-34446097,34447363-344474...    27   6.2  
06_03_1475 - 30391555-30391890,30391982-30392233,30392358-303926...    27   8.2  
03_06_0497 - 34332310-34334415                                         27   8.2  

>08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,
            8779138-8779247,8781153-8781294,8782298-8782686,
            8782752-8782834,8783524-8785244,8785894-8786040,
            8786121-8786264,8786669-8786741,8787413-8787633
          Length = 1148

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 412  HACLSGSYPLFCLLRLLDGICTRHPSNRPLHT 317
            H C SG   +F L+  + G  TRH + RPL T
Sbjct: 1100 HECGSGE--IFMLISFIQGFMTRHSTARPLGT 1129


>04_04_1563 -
           34445832-34445891,34445981-34446097,34447363-34447450,
           34447626-34447675,34447848-34448285
          Length = 250

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 118 SCVLAAAMVPRSRRSVTTNNENSSTANIKICAPQTPCA 231
           SC  A+   PR RRS TT   + +   I++C  +T CA
Sbjct: 10  SCSFAS---PRHRRSPTTARASGAAVEIRVCTNRT-CA 43


>06_03_1475 -
           30391555-30391890,30391982-30392233,30392358-30392619,
           30393232-30393320,30393408-30393592,30393673-30393781,
           30393886-30393942,30394047-30394196
          Length = 479

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 7/13 (53%), Positives = 13/13 (100%)
 Frame = +2

Query: 107 YSLFRAFSPPLWS 145
           YS+FR+++PP+W+
Sbjct: 8   YSVFRSYAPPIWA 20


>03_06_0497 - 34332310-34334415
          Length = 701

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 61  LPAAPQSAIMNRSLVILLVSCVLAAAMVPRSRRSVTTNNE 180
           LP      I+  S+VILL++    AA+V RSRR      E
Sbjct: 304 LPPLIILTILLLSVVILLLAAAAVAALVVRSRRYAEEEEE 343


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,692,831
Number of Sequences: 37544
Number of extensions: 241764
Number of successful extensions: 637
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)