Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_L12
(422 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical p... 29 1.0
AC006630-8|AAK68330.1| 232|Caenorhabditis elegans Hypothetical ... 29 1.8
Z81556-1|CAB04524.1| 965|Caenorhabditis elegans Hypothetical pr... 28 2.4
U41510-6|AAK39382.1| 454|Caenorhabditis elegans Hypothetical pr... 28 2.4
AF098504-1|AAC67412.1| 364|Caenorhabditis elegans Btb and math ... 28 2.4
U53149-1|AAD31546.1| 328|Caenorhabditis elegans Prion-like-(q/n... 28 3.2
Z72517-5|CAA96693.1| 545|Caenorhabditis elegans Hypothetical pr... 27 4.2
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 27 4.2
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 27 4.2
U64441-1|AAB06457.1| 549|Caenorhabditis elegans nonsense-mediat... 27 4.2
U64440-1|AAB06456.1| 549|Caenorhabditis elegans nonsense-mediat... 27 4.2
AF003141-6|AAK21489.1| 549|Caenorhabditis elegans Suppressor wi... 27 4.2
Z68749-3|CAA92958.1| 288|Caenorhabditis elegans Hypothetical pr... 27 5.5
U00048-3|AAB53827.3| 315|Caenorhabditis elegans Nematode astaci... 27 5.5
AF244356-1|AAF70462.1| 288|Caenorhabditis elegans long chain po... 27 5.5
Z70753-10|CAD44125.1| 296|Caenorhabditis elegans Hypothetical p... 27 7.3
Z70753-1|CAD44126.1| 296|Caenorhabditis elegans Hypothetical pr... 27 7.3
U40934-4|AAA81682.1| 873|Caenorhabditis elegans Vacuolar h atpa... 27 7.3
U13645-1|AAA20987.2| 470|Caenorhabditis elegans Hypothetical pr... 27 7.3
DQ338465-1|ABC67522.1| 690|Caenorhabditis elegans KEL-8 protein. 27 7.3
AF067946-5|AAC17684.4| 690|Caenorhabditis elegans Hypothetical ... 27 7.3
AF003147-1|AAB54205.2| 569|Caenorhabditis elegans Hypothetical ... 27 7.3
AB055110-1|BAB62291.1| 873|Caenorhabditis elegans VHA-5 protein. 27 7.3
Z82088-3|CAF32230.1| 978|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z82088-1|CAB05000.2| 901|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z81490-5|CAF32231.1| 978|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z81490-3|CAB04015.2| 901|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z81146-5|CAB03522.3| 699|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical pr... 26 9.7
U97008-7|AAB52313.1| 385|Caenorhabditis elegans Temporarily ass... 26 9.7
L19249-1|AAC37167.1| 303|Caenorhabditis elegans homeobox protei... 26 9.7
L14429-3|AAA28218.1| 305|Caenorhabditis elegans C.elegans homeo... 26 9.7
AL137227-7|CAB70235.1| 787|Caenorhabditis elegans Hypothetical ... 26 9.7
AJ303082-1|CAC19896.1| 901|Caenorhabditis elegans PMR1 protein ... 26 9.7
AJ303081-1|CAC19895.1| 901|Caenorhabditis elegans PMR1 protein ... 26 9.7
AF016680-1|AAB66163.2| 458|Caenorhabditis elegans Synaptotagmin... 26 9.7
>U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical
protein C44B7.2a protein.
Length = 597
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 192 SATILIICSYRTP*SWDHSGGENARNKE 109
SA ++ +Y TP WD SGGE R +E
Sbjct: 500 SAPFIVKWAYATPRRWDGSGGEPPRYEE 527
>AC006630-8|AAK68330.1| 232|Caenorhabditis elegans Hypothetical
protein F14H12.8 protein.
Length = 232
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 212 AHILIFAVLLFSLFVVTERLDLGTIAAARTHETRSI 105
AHI+IF V++ LFV ++ + A T + R+I
Sbjct: 118 AHIIIFFVVMIILFVFLSNINSSYVRRATTEKLRNI 153
>Z81556-1|CAB04524.1| 965|Caenorhabditis elegans Hypothetical
protein F58G1.1 protein.
Length = 965
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 184 SSTANIKICAPQTPCAWSVYRPTGRIIDMNITNNYCE 294
SSTA+ P P AW + G ++D +TN C+
Sbjct: 816 SSTASRHSAMPAAPKAWDLNIAPGILVDSIVTNPACK 852
>U41510-6|AAK39382.1| 454|Caenorhabditis elegans Hypothetical
protein ZC449.1 protein.
Length = 454
Score = 28.3 bits (60), Expect = 2.4
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = +1
Query: 40 IHSFVFRLPAAPQSAIMNRSLVILLVSCVLAAAMVPRSRRSVTTNNENSSTANIKICAPQ 219
I++ F LP +P N + IL V L+ RR +TT +S T ++ C Q
Sbjct: 297 IYAEKFCLPESP-FVCQNDEIFILHVQKTLS------KRRRITTKAASSITDCLRKCLEQ 349
Query: 220 TPCAWSVYRPTGRIIDM-NITNNYCECASDSE 312
C SVY + ++ N+ + + A DS+
Sbjct: 350 DDCRSSVYISNSKKCELHNVDVSTGDYARDSD 381
>AF098504-1|AAC67412.1| 364|Caenorhabditis elegans Btb and math
domain containingprotein 25 protein.
Length = 364
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 63 TGSTAVGNNESKFGNTPCFVRSRRRYGP 146
T ST + + KF N C V +RYGP
Sbjct: 2 TNSTRKFSLKQKFTNVSCMVNHEKRYGP 29
>U53149-1|AAD31546.1| 328|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 16
protein.
Length = 328
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 271 NITNNYCECASDSECQYAEDDSTGVVYRCRPA 366
N N C+ S+ Q A+ TG V +C+PA
Sbjct: 269 NSCQNQCQAQQQSQQQCAQACQTGCVAQCQPA 300
>Z72517-5|CAA96693.1| 545|Caenorhabditis elegans Hypothetical
protein T28F4.2 protein.
Length = 545
Score = 27.5 bits (58), Expect = 4.2
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = +1
Query: 175 NENSSTANIKI---CAPQTPCAWSVYRPTGRIIDMNITNNYCECAS 303
N+ SST NI + C PC S Y PT + T+ Y +S
Sbjct: 350 NQTSSTPNIDLLVECNCNPPCDESTYTPTVSLAQFPSTSYYVATSS 395
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
protein F57F4.4 protein.
Length = 2090
Score = 27.5 bits (58), Expect = 4.2
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +1
Query: 169 TNNENSSTANIKICAPQTPCAWSVYRPTGRIIDMNITNNYCECASDSEC 315
T N NS A + C P + CA R ID ++T C C +EC
Sbjct: 653 TVNNNSHYATLYTCDPSSACAAMGLRNNCSTIDNSLT--AC-CCDSNEC 698
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 27.5 bits (58), Expect = 4.2
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +1
Query: 169 TNNENSSTANIKICAPQTPCAWSVYRPTGRIIDMNITNNYCECASDSEC 315
T N NS A + C P + CA R ID ++T C C +EC
Sbjct: 653 TVNNNSHYATLYTCDPSSACAAMGLRNNCSTIDNSLT--AC-CCDSNEC 698
>U64441-1|AAB06457.1| 549|Caenorhabditis elegans nonsense-mediated
mRNA decay proteinprotein.
Length = 549
Score = 27.5 bits (58), Expect = 4.2
Identities = 17/68 (25%), Positives = 28/68 (41%)
Frame = -3
Query: 207 YLDICSATILIICSYRTP*SWDHSGGENARNKEYYQTSIHYCRLRCCR*TKYE*MNEIVM 28
Y+ I S TI C SW E + + + H+ +L TK+ +N++VM
Sbjct: 272 YITIYSRTISSKCLLAEAISWISDSAEILGHLDEQKNEPHFQKLSVFAKTKWNELNDLVM 331
Query: 27 RKMQGAHT 4
+ T
Sbjct: 332 NHINSVFT 339
>U64440-1|AAB06456.1| 549|Caenorhabditis elegans nonsense-mediated
mRNA decay proteinprotein.
Length = 549
Score = 27.5 bits (58), Expect = 4.2
Identities = 17/68 (25%), Positives = 28/68 (41%)
Frame = -3
Query: 207 YLDICSATILIICSYRTP*SWDHSGGENARNKEYYQTSIHYCRLRCCR*TKYE*MNEIVM 28
Y+ I S TI C SW E + + + H+ +L TK+ +N++VM
Sbjct: 272 YITIYSRTISSKCLLAEAISWISDSAEILGHLDEQKNEPHFQKLSVFAKTKWNELNDLVM 331
Query: 27 RKMQGAHT 4
+ T
Sbjct: 332 NHINSVFT 339
>AF003141-6|AAK21489.1| 549|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 5 protein.
Length = 549
Score = 27.5 bits (58), Expect = 4.2
Identities = 17/68 (25%), Positives = 28/68 (41%)
Frame = -3
Query: 207 YLDICSATILIICSYRTP*SWDHSGGENARNKEYYQTSIHYCRLRCCR*TKYE*MNEIVM 28
Y+ I S TI C SW E + + + H+ +L TK+ +N++VM
Sbjct: 272 YITIYSRTISSKCLLAEAISWISDSAEILGHLDEQKNEPHFQKLSVFAKTKWNELNDLVM 331
Query: 27 RKMQGAHT 4
+ T
Sbjct: 332 NHINSVFT 339
>Z68749-3|CAA92958.1| 288|Caenorhabditis elegans Hypothetical
protein F56H11.4 protein.
Length = 288
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 31 HYFIHSFVFRLPAAPQSAIMNRSLVILLVSCVLAA 135
+YF+ S R+P AI + +V ++SC + A
Sbjct: 194 YYFLRSMKIRVPGFIAQAITSLQIVQFIISCAVLA 228
>U00048-3|AAB53827.3| 315|Caenorhabditis elegans Nematode astacin
protease protein 4 protein.
Length = 315
Score = 27.1 bits (57), Expect = 5.5
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 384 CFVFFDCWTASVHDTRRIV 328
C +F CWTASV + ++++
Sbjct: 12 CAIFATCWTASVVNNKQVI 30
>AF244356-1|AAF70462.1| 288|Caenorhabditis elegans long chain
polyunsaturated fattyacid elongation enzyme protein.
Length = 288
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 31 HYFIHSFVFRLPAAPQSAIMNRSLVILLVSCVLAA 135
+YF+ S R+P AI + +V ++SC + A
Sbjct: 194 YYFLRSMKIRVPGFIAQAITSLQIVQFIISCAVLA 228
>Z70753-10|CAD44125.1| 296|Caenorhabditis elegans Hypothetical
protein F40F9.1a protein.
Length = 296
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 354 SVHDTRRIVLCILAFAIACTLTVVI 280
S H +VL LA I CT ++VI
Sbjct: 168 SAHHDANVVLLALAICIGCTFSIVI 192
>Z70753-1|CAD44126.1| 296|Caenorhabditis elegans Hypothetical
protein F40F9.1b protein.
Length = 296
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 354 SVHDTRRIVLCILAFAIACTLTVVI 280
S H +VL LA I CT ++VI
Sbjct: 168 SAHHDANVVLLALAICIGCTFSIVI 192
>U40934-4|AAA81682.1| 873|Caenorhabditis elegans Vacuolar h atpase
protein 5 protein.
Length = 873
Score = 26.6 bits (56), Expect = 7.3
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -1
Query: 311 SLSLAHSQ*LFVMFISIILPVGL*TDQAQGVCGAHIL--IFAVLLFSLFVVTERL 153
+LSLAH+Q V++ + + GL G +++ IF VL S+ V+ E L
Sbjct: 778 ALSLAHAQLSEVLWHMVFVTGGLGISGTAGFIAVYVVFFIFFVLTISILVLMEGL 832
>U13645-1|AAA20987.2| 470|Caenorhabditis elegans Hypothetical
protein C05D10.2a protein.
Length = 470
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 57 SFTGSTAVGNNESKFGNTPCFVRSRRRYGPKIKAFGNYK 173
S T + G + GNTP ++ RRR + + F N K
Sbjct: 418 SRTSKDSNGEMRNGNGNTPSSIKQRRRSVERARLFANIK 456
>DQ338465-1|ABC67522.1| 690|Caenorhabditis elegans KEL-8 protein.
Length = 690
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 112 LVSCVLAAAMVPRSRRSVTTNNENSSTANIKICAPQTPCAWSVYRPTGR 258
++S ++ AM P R+ +N+EN+S + + P + S T R
Sbjct: 329 IISAMVLDAMTPSKRKHPESNHENTSEYSASMACPSLTASSSSSTSTFR 377
>AF067946-5|AAC17684.4| 690|Caenorhabditis elegans Hypothetical
protein W02G9.2 protein.
Length = 690
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 112 LVSCVLAAAMVPRSRRSVTTNNENSSTANIKICAPQTPCAWSVYRPTGR 258
++S ++ AM P R+ +N+EN+S + + P + S T R
Sbjct: 329 IISAMVLDAMTPSKRKHPESNHENTSEYSASMACPSLTASSSSSTSTFR 377
>AF003147-1|AAB54205.2| 569|Caenorhabditis elegans Hypothetical
protein C11D9.1 protein.
Length = 569
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 79 TAVLPVNEIRMNE*NSDEKNARCAH 5
T VLP+NE+ +NE +D N + H
Sbjct: 472 TRVLPINEVDINEMPNDALNLKLYH 496
>AB055110-1|BAB62291.1| 873|Caenorhabditis elegans VHA-5 protein.
Length = 873
Score = 26.6 bits (56), Expect = 7.3
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -1
Query: 311 SLSLAHSQ*LFVMFISIILPVGL*TDQAQGVCGAHIL--IFAVLLFSLFVVTERL 153
+LSLAH+Q V++ + + GL G +++ IF VL S+ V+ E L
Sbjct: 778 ALSLAHAQLSEVLWHMVFVTGGLGISGTAGFIAVYVVFFIFFVLTISILVLMEGL 832
>Z82088-3|CAF32230.1| 978|Caenorhabditis elegans Hypothetical protein
ZK256.1c protein.
Length = 978
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Frame = -3
Query: 384 CFVFFDCWTA-SVHDTRRIVLCI-----LAFAIACTLTVVIRYVHIYNSP 253
CFV FD W A S +R+++ I F++A + +++ + + IY +P
Sbjct: 877 CFVLFDMWNALSCRSSRKMIWQIGLRRNRMFSLAVSASLICQLLVIYWAP 926
>Z82088-1|CAB05000.2| 901|Caenorhabditis elegans Hypothetical
protein ZK256.1a protein.
Length = 901
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Frame = -3
Query: 384 CFVFFDCWTA-SVHDTRRIVLCI-----LAFAIACTLTVVIRYVHIYNSP 253
CFV FD W A S +R+++ I F++A + +++ + + IY +P
Sbjct: 800 CFVLFDMWNALSCRSSRKMIWQIGLRRNRMFSLAVSASLICQLLVIYWAP 849
>Z81490-5|CAF32231.1| 978|Caenorhabditis elegans Hypothetical protein
ZK256.1c protein.
Length = 978
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Frame = -3
Query: 384 CFVFFDCWTA-SVHDTRRIVLCI-----LAFAIACTLTVVIRYVHIYNSP 253
CFV FD W A S +R+++ I F++A + +++ + + IY +P
Sbjct: 877 CFVLFDMWNALSCRSSRKMIWQIGLRRNRMFSLAVSASLICQLLVIYWAP 926
>Z81490-3|CAB04015.2| 901|Caenorhabditis elegans Hypothetical
protein ZK256.1a protein.
Length = 901
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Frame = -3
Query: 384 CFVFFDCWTA-SVHDTRRIVLCI-----LAFAIACTLTVVIRYVHIYNSP 253
CFV FD W A S +R+++ I F++A + +++ + + IY +P
Sbjct: 800 CFVLFDMWNALSCRSSRKMIWQIGLRRNRMFSLAVSASLICQLLVIYWAP 849
>Z81146-5|CAB03522.3| 699|Caenorhabditis elegans Hypothetical
protein K10D11.3 protein.
Length = 699
Score = 26.2 bits (55), Expect = 9.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 184 SSTANIKICAPQTPCAWSVYRPTG 255
+ T N + AP C+W++Y P G
Sbjct: 252 NQTLNPPMYAPNQMCSWTIYIPMG 275
>Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical protein
C44B9.4 protein.
Length = 1150
Score = 26.2 bits (55), Expect = 9.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 289 CECASDSECQYAEDDSTGVVYRC 357
C C S+ Q + +STG + RC
Sbjct: 1105 CRCQKHSDLQISRQESTGELVRC 1127
>U97008-7|AAB52313.1| 385|Caenorhabditis elegans Temporarily
assigned gene nameprotein 293 protein.
Length = 385
Score = 26.2 bits (55), Expect = 9.7
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 31 HYFIHSFVFRLPAAPQSAIMNRS-LVILLVSCVLAAAMVPRSRRSVTTNNENSSTAN 198
H+F F++ + QS+ + S + LLVSC+LA VP S + + + N + N
Sbjct: 112 HFFNDKFIYTVIIFTQSSSLRLSDMFGLLVSCILAFT-VPESAFADISGDLNCTQYN 167
>L19249-1|AAC37167.1| 303|Caenorhabditis elegans homeobox protein
protein.
Length = 303
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 293 SVQAIANASMQRTIRRVSCTDAVQQSKKT 379
+V+A+ANA T RR SC + S+ T
Sbjct: 95 AVEALANALFATTSRRASCPEPPASSQAT 123
>L14429-3|AAA28218.1| 305|Caenorhabditis elegans C.elegans homeobox
protein 23 protein.
Length = 305
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 293 SVQAIANASMQRTIRRVSCTDAVQQSKKT 379
+V+A+ANA T RR SC + S+ T
Sbjct: 97 AVEALANALFATTSRRASCPEPPASSQAT 125
>AL137227-7|CAB70235.1| 787|Caenorhabditis elegans Hypothetical
protein F58D5.6 protein.
Length = 787
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 332 SSSAYWHSLSLAHSQ*LFVMFISIILPVGL 243
SSS W+ ++H Q ++F+ + PVG+
Sbjct: 712 SSSYKWYRFVVSHPQEFTLVFLFVAFPVGI 741
>AJ303082-1|CAC19896.1| 901|Caenorhabditis elegans PMR1 protein
protein.
Length = 901
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Frame = -3
Query: 384 CFVFFDCWTA-SVHDTRRIVLCI-----LAFAIACTLTVVIRYVHIYNSP 253
CFV FD W A S +R+++ I F++A + +++ + + IY +P
Sbjct: 800 CFVLFDMWNALSCRSSRKMIWQIGLRRNRMFSLAVSASLICQLLVIYWAP 849
>AJ303081-1|CAC19895.1| 901|Caenorhabditis elegans PMR1 protein
protein.
Length = 901
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Frame = -3
Query: 384 CFVFFDCWTA-SVHDTRRIVLCI-----LAFAIACTLTVVIRYVHIYNSP 253
CFV FD W A S +R+++ I F++A + +++ + + IY +P
Sbjct: 800 CFVLFDMWNALSCRSSRKMIWQIGLRRNRMFSLAVSASLICQLLVIYWAP 849
>AF016680-1|AAB66163.2| 458|Caenorhabditis elegans Synaptotagmin
protein 5 protein.
Length = 458
Score = 26.2 bits (55), Expect = 9.7
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +1
Query: 106 ILLVSCVL---AAAMVPRSRRSVTTNNENSSTANIKICAPQTPCAWSVYRPTGRIIDMNI 276
++L SC L A V + +R V + +S IK+ PQ+ S+ + G +
Sbjct: 18 VILSSCALYFGARICVRQIKRKVKYSEVPTSVPEIKVSVPQSASTLSISKMNGSYRARVL 77
Query: 277 TNNYC 291
+ N C
Sbjct: 78 SRNGC 82
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,970,228
Number of Sequences: 27780
Number of extensions: 211557
Number of successful extensions: 684
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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