Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_L11
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    28   0.55 
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    28   0.72 
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    27   0.96 
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    26   2.9  
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p...    25   3.9  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   5.1  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   6.7  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   6.7  
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb...    24   8.9  

>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 36  IFLILCFLVNCSSASREAIFRDDYKYY 116
           IFL LC  V+ S A+  A   +DYK+Y
Sbjct: 216 IFLHLCIFVSVSFATVLACILEDYKFY 242


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 27.9 bits (59), Expect = 0.72
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +3

Query: 39  FLILCFLVNCSSASREAIFRDDYKYYEDVNGWIKLHKVPANWHDARLR 182
           +L+L  + +      +   +DDYKY +D +G+  L+    N++  RL+
Sbjct: 100 YLVLIIIGHVRDFFGKRFHKDDYKYLKDNDGYAPLYNHFDNFYVRRLQ 147


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 27.5 bits (58), Expect = 0.96
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 225 NLRNIMLSVMIAESADPSLGVYSGIHSTFSNGSYS 329
           NL  I LS  + +  DP+L  +SG  +   +G YS
Sbjct: 223 NLNEIKLSTWLVQRQDPALYGFSGRSNKLVDGCYS 257


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 892

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 2/123 (1%)
 Frame = +3

Query: 63   NCSSASREAIFRDDYKYYEDVNGWIKLHKVPANWHDARLRCLAEGASLTSPSNPNLRN-- 236
            NC      A   + Y         ++   +     DA  + L    + T+  N N+ +  
Sbjct: 715  NCVDDITPAFVNEAYSLLRQSIIHVERDDIEVEEDDAEAQELENDNTNTTNGNDNVSSEE 774

Query: 237  IMLSVMIAESADPSLGVYSGIHSTFSNGSYSTIEGVPITNIPANWATGQPDHVYTENCVV 416
             +    +  + D  + + +GI       S   ++GVP  ++  ++   + D  +TE  ++
Sbjct: 775  ALQKPKVKITYDKYVSIMNGILQVLRQRSTEGVDGVPAGDLVQSYLELREDQFHTEEDII 834

Query: 417  FHM 425
            + +
Sbjct: 835  YEV 837


>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 242 HNVSQIRVARRR*RSTFCKTAQSCIVPVSRNLM 144
           H+V++ RVA R   S  C T +  I    RN M
Sbjct: 173 HSVARARVAHRHLVSGLCATEEEAIERTDRNDM 205


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 126 NGWIKLHKVPANWHDAR-LRCLAEGASLTSPSNPNLRNI 239
           NGW+K   V   W   R L  L + +SLTS  NP   N+
Sbjct: 366 NGWLKEDVVDQLWLPKRSLSALKKSSSLTS-ENPFQLNV 403


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 437  QGTVHVED--DAVLRIHVVRLTRRPISWYVRYRYTFYSRVR 321
            Q ++H  D  D V R+   ++ R+P+ W    R+ FY R+R
Sbjct: 2128 QISIHFADLHDRVGRMVAKKVVRKPLKWTEARRF-FYWRLR 2167


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 333  IEGVPITNIPANW 371
            I+G P+TNI  NW
Sbjct: 1159 IDGYPLTNIDTNW 1171


>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -3

Query: 297 SRSRPLDWGQHSLRSSRI 244
           SR RPL    HSL SSRI
Sbjct: 274 SRRRPLSRSIHSLSSSRI 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,855,660
Number of Sequences: 5004
Number of extensions: 36032
Number of successful extensions: 85
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)