Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_L10
         (332 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    24   5.3  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    24   7.0  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    23   9.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   9.2  

>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 319 WNSQILT*HHQSLMRLGEGF 260
           WN  +L   H SL +  EGF
Sbjct: 247 WNRSVLNKEHGSLKKAAEGF 266


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 10  IDNFICRTINLNILQLKFEKWRS*AKFR 93
           + N  C+  ++N  QLK E W    K R
Sbjct: 737 LHNLCCKFPSINSFQLKDEPWMDATKVR 764


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = -3

Query: 297 NIISHLCGWVKASCPSVYSFCWKISYHPQSGVIYQTAVVPQSGTRIRTPTQRILK 133
           NII  LC WV+      Y      S+     +    A+ P+S   I  P  ++++
Sbjct: 649 NIILFLCLWVQGGRVRAYCIIPNFSFAIAFKIWCMFALDPKSHYMIEDPYMKVVE 703


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 134 NNSDRRCCKQELSVRNLAQDLH 69
           NN DR+C K++++ R  +   H
Sbjct: 418 NNVDRKCVKKQMNYREESHTPH 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,226,646
Number of Sequences: 5004
Number of extensions: 21046
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)