Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_L10
         (332 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0027 + 22232781-22233051,22234256-22234329,22234471-222346...    29   0.91 
10_08_0148 - 15220117-15220218,15220416-15220482,15220721-152207...    26   6.4  
07_03_1615 - 28157237-28157472,28157649-28157728,28157853-281580...    26   6.4  

>04_04_0027 +
           22232781-22233051,22234256-22234329,22234471-22234638,
           22234812-22234971,22235062-22235145,22235781-22236078,
           22236158-22236364,22236465-22236735,22236971-22237055,
           22237141-22237182,22237302-22237350,22237825-22237894,
           22238314-22238463,22238592-22238619,22238856-22238990,
           22240693-22241469,22242133-22242192,22242367-22242413
          Length = 991

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 210 SGVIYQTAV-VPQSGTRIRTPTQRILKQQRP 121
           SG++Y  AV V  +  R R+P+ RIL+  RP
Sbjct: 595 SGILYAAAVAVTTTDMRARSPSSRILQDARP 625


>10_08_0148 -
           15220117-15220218,15220416-15220482,15220721-15220750,
           15221506-15221714,15221797-15221927,15222430-15222697
          Length = 268

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 317 ELSDFDLTSSVTYAVG 270
           ELSDFDL + VT+A G
Sbjct: 106 ELSDFDLLTGVTFASG 121


>07_03_1615 - 28157237-28157472,28157649-28157728,28157853-28158009,
            28158379-28158565,28158646-28158772,28159218-28159805,
            28159898-28160443,28161579-28161620,28162081-28162145,
            28162273-28162377,28162682-28162741,28163149-28163237,
            28163611-28163732,28163862-28163968,28164041-28164111,
            28164377-28164470,28165010-28165247,28166112-28166347
          Length = 1049

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 108  TGTECSKLGSRSPFFKLQLQN 46
            TG++CS +G  S FF  QLQ+
Sbjct: 980  TGSDCSSIGDCSWFFDEQLQD 1000


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,573,796
Number of Sequences: 37544
Number of extensions: 129099
Number of successful extensions: 287
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)