Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_L10
         (332 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF268617-1|AAG53084.1|  186|Homo sapiens POU 5 domain protein pr...    29   3.4  
AF268613-1|AAG53082.1|  286|Homo sapiens POU 5 domain protein pr...    29   4.5  
Z11898-1|CAA77951.1|  360|Homo sapiens octamer binding protein 3...    28   7.9  
BX088580-3|CAI18709.1|  360|Homo sapiens POU domain class 5 tran...    28   7.9  
BC117437-1|AAI17438.1|  360|Homo sapiens POU class 5 homeobox 1 ...    28   7.9  
BC117435-1|AAI17436.1|  360|Homo sapiens POU class 5 homeobox 1 ...    28   7.9  
AL773544-9|CAI18486.1|  360|Homo sapiens POU domain, class 5, tr...    28   7.9  
AL662844-17|CAI18331.1|  360|Homo sapiens POU domain, class 5, t...    28   7.9  
AL662833-12|CAI17408.1|  360|Homo sapiens POU domain, class 5, t...    28   7.9  
AB202105-2|BAE78630.1|  360|Homo sapiens POU domain, class 5, tr...    28   7.9  
AB103619-2|BAF31281.1|  360|Homo sapiens OTF3 protein protein.         28   7.9  

>AF268617-1|AAG53084.1|  186|Homo sapiens POU 5 domain protein
           protein.
          Length = 186

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 273 WVKASCPSVYSFCWKISY-HPQSGVIYQTAVVPQSGTRIRTP 151
           W    CP  Y FC  ++Y  PQ+GV     +VPQ G     P
Sbjct: 58  WGIPPCPPPYEFCGGMAYCGPQTGV----GLVPQDGLETSQP 95


>AF268613-1|AAG53082.1|  286|Homo sapiens POU 5 domain protein
           protein.
          Length = 286

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 273 WVKASCPSVYSFCWKISY-HPQSGVIYQTAVVPQSGTRIRTP 151
           W    CP +Y FC  ++Y  PQ GV     +VPQ G     P
Sbjct: 51  WGIPPCPPLYEFCGGMAYCGPQVGV----RLVPQGGLETSQP 88


>Z11898-1|CAA77951.1|  360|Homo sapiens octamer binding protein 3A
           protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 273 WVKASCPSVYSFCWKISY-HPQSGVIYQTAVVPQSGTRIRTP 151
           W    CP  Y FC  ++Y  PQ GV     +VPQ G     P
Sbjct: 58  WGIPPCPPPYEFCGGMAYCGPQVGV----GLVPQGGLETSQP 95


>BX088580-3|CAI18709.1|  360|Homo sapiens POU domain class 5
           transcription factor 1 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 273 WVKASCPSVYSFCWKISY-HPQSGVIYQTAVVPQSGTRIRTP 151
           W    CP  Y FC  ++Y  PQ GV     +VPQ G     P
Sbjct: 58  WGIPPCPPPYEFCGGMAYCGPQVGV----GLVPQGGLETSQP 95


>BC117437-1|AAI17438.1|  360|Homo sapiens POU class 5 homeobox 1
           protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 273 WVKASCPSVYSFCWKISY-HPQSGVIYQTAVVPQSGTRIRTP 151
           W    CP  Y FC  ++Y  PQ GV     +VPQ G     P
Sbjct: 58  WGIPPCPPPYEFCGGMAYCGPQVGV----GLVPQGGLETSQP 95


>BC117435-1|AAI17436.1|  360|Homo sapiens POU class 5 homeobox 1
           protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 273 WVKASCPSVYSFCWKISY-HPQSGVIYQTAVVPQSGTRIRTP 151
           W    CP  Y FC  ++Y  PQ GV     +VPQ G     P
Sbjct: 58  WGIPPCPPPYEFCGGMAYCGPQVGV----GLVPQGGLETSQP 95


>AL773544-9|CAI18486.1|  360|Homo sapiens POU domain, class 5,
           transcription factor 1 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 273 WVKASCPSVYSFCWKISY-HPQSGVIYQTAVVPQSGTRIRTP 151
           W    CP  Y FC  ++Y  PQ GV     +VPQ G     P
Sbjct: 58  WGIPPCPPPYEFCGGMAYCGPQVGV----GLVPQGGLETSQP 95


>AL662844-17|CAI18331.1|  360|Homo sapiens POU domain, class 5,
           transcription factor 1 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 273 WVKASCPSVYSFCWKISY-HPQSGVIYQTAVVPQSGTRIRTP 151
           W    CP  Y FC  ++Y  PQ GV     +VPQ G     P
Sbjct: 58  WGIPPCPPPYEFCGGMAYCGPQVGV----GLVPQGGLETSQP 95


>AL662833-12|CAI17408.1|  360|Homo sapiens POU domain, class 5,
           transcription factor 1 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 273 WVKASCPSVYSFCWKISY-HPQSGVIYQTAVVPQSGTRIRTP 151
           W    CP  Y FC  ++Y  PQ GV     +VPQ G     P
Sbjct: 58  WGIPPCPPPYEFCGGMAYCGPQVGV----GLVPQGGLETSQP 95


>AB202105-2|BAE78630.1|  360|Homo sapiens POU domain, class 5,
           transcription factor 1 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 273 WVKASCPSVYSFCWKISY-HPQSGVIYQTAVVPQSGTRIRTP 151
           W    CP  Y FC  ++Y  PQ GV     +VPQ G     P
Sbjct: 58  WGIPPCPPPYEFCGGMAYCGPQVGV----GLVPQGGLETSQP 95


>AB103619-2|BAF31281.1|  360|Homo sapiens OTF3 protein protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 273 WVKASCPSVYSFCWKISY-HPQSGVIYQTAVVPQSGTRIRTP 151
           W    CP  Y FC  ++Y  PQ GV     +VPQ G     P
Sbjct: 58  WGIPPCPPPYEFCGGMAYCGPQVGV----GLVPQGGLETSQP 95


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,000,942
Number of Sequences: 237096
Number of extensions: 729764
Number of successful extensions: 1251
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1736741460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)