Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_L10
         (332 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    30   0.46 
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    30   0.46 
AC025727-10|AAK66029.1|  707|Caenorhabditis elegans Hypothetical...    28   1.4  
U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine rece...    27   3.3  
Z37983-10|CAA86060.4|  267|Caenorhabditis elegans Hypothetical p...    27   4.3  
U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z83233-6|CAB05763.1|  355|Caenorhabditis elegans Hypothetical pr...    26   5.7  
U53149-4|AAA96120.1|  956|Caenorhabditis elegans Patched related...    26   5.7  
Z93397-8|CAB07716.2|  545|Caenorhabditis elegans Hypothetical pr...    26   7.5  
AL132904-27|CAC35854.1|  545|Caenorhabditis elegans Hypothetical...    26   7.5  

>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
            F25C8.3b protein.
          Length = 3175

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -3

Query: 207  GVIYQTAVVPQSGTRIRTPTQRILKQQRPPLL*TGTECS 91
            G    T  VP++G RI T  QR+LK+  P  + TGT+ S
Sbjct: 1394 GSTKSTTYVPETGRRIATGRQRLLKRGSP--MATGTQPS 1430


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
            F25C8.3a protein.
          Length = 3184

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -3

Query: 207  GVIYQTAVVPQSGTRIRTPTQRILKQQRPPLL*TGTECS 91
            G    T  VP++G RI T  QR+LK+  P  + TGT+ S
Sbjct: 1394 GSTKSTTYVPETGRRIATGRQRLLKRGSP--MATGTQPS 1430


>AC025727-10|AAK66029.1|  707|Caenorhabditis elegans Hypothetical
           protein Y73E7A.8 protein.
          Length = 707

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -3

Query: 273 WVKASCPSVYSFCWKISYHPQSGVIYQTAVVPQSGTRIRTPTQRILKQQRPP 118
           WVK   P   +   + S  P    I+   V+PQ+ T   TP  R+   Q PP
Sbjct: 473 WVKKISPIQINKSTEKSIFPGKNAIHYGEVIPQTTTTRTTP--RVTTTQAPP 522


>U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 12 protein.
          Length = 325

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 260 LVLPFILFVGRFLIIHNQG*FIKLRLFRRVEPE 162
           L++PF+  +  F+ +     FIKL+LFR V+ E
Sbjct: 275 LLIPFLSPLASFIFVTPYRQFIKLKLFRIVQIE 307


>Z37983-10|CAA86060.4|  267|Caenorhabditis elegans Hypothetical
           protein B0393.7 protein.
          Length = 267

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +2

Query: 119 GGRC-CFSMRCVGVRIRVPLC-GTTAV**ITPDC 214
           GGRC  F   C   R R PLC    AV   TPDC
Sbjct: 30  GGRCGLFQFDC-DTRARTPLCIPLVAVRDCTPDC 62


>U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical
           protein F47D12.5 protein.
          Length = 633

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -1

Query: 83  AQDLHFSNFNCKMFKFIVLHIKLSIK 6
           +Q +++ +FN K+   I+LH+K SI+
Sbjct: 402 SQSVYYIDFNHKLMPKIILHLKKSIE 427


>Z83233-6|CAB05763.1|  355|Caenorhabditis elegans Hypothetical
           protein K06B4.6 protein.
          Length = 355

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 59  FNCKMFKFIVLHIKLSIKC 3
           FNCK FK   +H K   KC
Sbjct: 52  FNCKYFKNCTIHYKTHPKC 70


>U53149-4|AAA96120.1|  956|Caenorhabditis elegans Patched related
           family protein 1 protein.
          Length = 956

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 292 HQSLMRLGEGFLSFRLFFLLEDF 224
           H+   R+GE    FRL+FLL  F
Sbjct: 9   HKVFFRVGENVHKFRLYFLLLSF 31


>Z93397-8|CAB07716.2|  545|Caenorhabditis elegans Hypothetical
           protein ZC482.2 protein.
          Length = 545

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 211 IRGNLSNCGCSAE 173
           +RGNL +CGC  E
Sbjct: 200 VRGNLKDCGCDGE 212


>AL132904-27|CAC35854.1|  545|Caenorhabditis elegans Hypothetical
           protein ZC482.2 protein.
          Length = 545

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 211 IRGNLSNCGCSAE 173
           +RGNL +CGC  E
Sbjct: 200 VRGNLKDCGCDGE 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,780,059
Number of Sequences: 27780
Number of extensions: 117859
Number of successful extensions: 305
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)