Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_L09
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    28   0.85 
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    25   4.5  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    25   4.5  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   7.9  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    25   7.9  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   7.9  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    25   7.9  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.9  

>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.9 bits (59), Expect = 0.85
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 9   RVRRDAHGALTLNSDGTSGAGVKVPFAGNDKNIVSAI-GSLDLTNRQKLGAATAGVALDN 185
           R+ RD    +  N DGTSGA   + F G  K +   +  S D+++  K  AA   VALD 
Sbjct: 442 RIVRDIADVIEDNMDGTSGALYAIFFHGFAKGMKDTLEKSKDISS--KTWAAGLKVALDT 499

Query: 186 V 188
           +
Sbjct: 500 L 500



 Score = 25.0 bits (52), Expect = 6.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 165 AGVALDNVNGHGVSLTDTHIPG 230
           A  A+DN+   G SL   H+PG
Sbjct: 178 AKAAIDNLVSIGASLAHVHVPG 199


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 193 PFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSE 47
           P T  S++  V++        S    + T+ ++ PA  + TP P  PS+
Sbjct: 155 PSTTDSSSTDVSSSDSVSTSASSSNASNTVSVTSPASSSATPLPNQPSQ 203


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 355 VLKLGTLAISGIFLVAKAFAVMSWLSLWKRFTLPAAVTLS 236
           ++  G+L+I  IF+    F + SW++L+   T   A TLS
Sbjct: 401 IIVFGSLSI--IFIHIYCFKITSWVNLYGWITCTIARTLS 438


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = -3

Query: 196 WPFTLSSATPAVAAPSFCLLVKSKEPI-ALTIFLSLPAKGTLTPAPEVPSELS 41
           +PF   S  P    PS+  LV    P   LT+     + G L+ A  +PS  S
Sbjct: 271 YPFQQPSYNPNALVPSYTTLVSQLPPSPCLTV-----SSGPLSTASSIPSNCS 318


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 354 TVGGGIDYMFKD-KIGASATAGHTDFIN 434
           +VG  I Y  +D K+    TA H DF+N
Sbjct: 25  SVGRAIRYCKEDGKVEGCETASHVDFLN 52


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 97  SLPAKGTLTPAPEVPSE 47
           SLPA GT TP+P V  +
Sbjct: 725 SLPAAGTATPSPVVSQQ 741


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 287 VVIVVEEIHFAGSCHLVSEPG 225
           +V +  +IHF+G+C+ V+  G
Sbjct: 397 IVSIPHQIHFSGTCYSVAAGG 417


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 273 HNDNHDITAKAFATRNMPDIANVPNFNT 356
           H D+ DITA + +T   P+  +V  F++
Sbjct: 113 HPDSEDITAVSLSTPPFPESIDVARFSS 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,047,026
Number of Sequences: 5004
Number of extensions: 42909
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)