Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_L09
(483 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315... 31 0.37
09_04_0631 - 19114785-19114825,19114911-19114995,19115092-191152... 30 0.85
04_02_0006 + 8455219-8457469,8457560-8457924 29 2.0
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278... 29 2.6
12_02_0412 - 18799217-18801061 28 3.4
09_01_0066 - 978018-978500,978588-979034,979113-979412,979521-97... 28 3.4
02_04_0519 + 23619084-23619198,23619468-23619559,23619655-236197... 28 3.4
02_03_0247 - 16809742-16809780,16810070-16810298,16810381-168105... 28 4.5
12_02_0591 + 20864861-20867329 27 6.0
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 27 6.0
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724... 27 7.9
03_06_0262 + 32730927-32731634,32731713-32732159,32732247-327331... 27 7.9
>08_02_1455 +
27230134-27231110,27231195-27231327,27231417-27231501,
27233372-27233571
Length = 464
Score = 31.5 bits (68), Expect = 0.37
Identities = 25/71 (35%), Positives = 32/71 (45%)
Frame = -3
Query: 232 NPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVP 53
+PG V +P P LSSA A AA S+ L S P A P +P P++P
Sbjct: 17 SPGQPPVVPRSPTPLDLSSAAAAAAAASYRRLSPSLRPPA------HPQARLPSPYPQIP 70
Query: 52 SELSVRAPCAS 20
S S A +S
Sbjct: 71 SSSSAAAAGSS 81
>09_04_0631 -
19114785-19114825,19114911-19114995,19115092-19115286,
19115372-19115446,19115530-19115598,19115693-19115758,
19115847-19116062,19116155-19116508
Length = 366
Score = 30.3 bits (65), Expect = 0.85
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Frame = +3
Query: 150 LGAATAGVALDNVNGHGVSLTDTHI--PGFGDKVT--AAGKVNLFHNDNHDITAKAFATR 317
+ AA AG+ L ++G G + +T PGF ++ G LF + +R
Sbjct: 11 MSAAAAGLDLGVLDGGGGAFLETLCGGPGFAERAARLCGGGAGLFGLPAVGNAERGGCSR 70
Query: 318 NMPDIANVPNFNTVGGGIDYMFKDKIGASATAG 416
+++ + GGG D K K ASA AG
Sbjct: 71 EGSSVSDPAWAHATGGGGDNARKRKAPASAAAG 103
>04_02_0006 + 8455219-8457469,8457560-8457924
Length = 871
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -3
Query: 265 FTLPAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSL 92
F P +V+L N G+C ++ + P SS PA + LL+K I + +F +L
Sbjct: 437 FQRPNSVSLEGNKGLCANIHILNLPICPSS--PAKTKNNKRLLLKVIPSITIALFSAL 492
>10_07_0176 -
13826764-13827064,13827271-13827377,13827474-13827836,
13827912-13828079,13828153-13828374,13828784-13829023,
13829640-13829719,13829853-13830018,13830720-13830783,
13830861-13830962,13831085-13831227,13831370-13831474,
13831551-13831706,13832125-13832241,13832315-13832392,
13832466-13832550,13833334-13833455,13833546-13833611,
13835190-13835284,13835427-13835523,13835873-13835983,
13836083-13836164,13836292-13836353,13836620-13836685,
13838002-13838232
Length = 1142
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 309 ATRNMPDIANVPNFNTVGGGIDYMFKDKIG 398
A N P +A N N G ++Y+F DK G
Sbjct: 385 AESNTPALARTSNLNEELGQVEYIFSDKTG 414
>12_02_0412 - 18799217-18801061
Length = 614
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 374 VYSATDSVEVGYISDIWHISGGESLRCDVV 285
+YS+ +E G D+W+I GG L V+
Sbjct: 23 IYSSETDLEEGVFHDVWNICGGMPLAMIVI 52
>09_01_0066 -
978018-978500,978588-979034,979113-979412,979521-979855,
980325-980703
Length = 647
Score = 28.3 bits (60), Expect = 3.4
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = -3
Query: 220 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSE- 47
C S L P ++ SA + P+ C L+ P F L A+G P PE
Sbjct: 467 CASTELAENPTSVDSAVDHITEPTSCTLIVRVMP----TFTVLAAEGLAYKPTPETRVHG 522
Query: 46 LSVRAPCASLR 14
+RA CA ++
Sbjct: 523 AQLRADCAKVQ 533
>02_04_0519 +
23619084-23619198,23619468-23619559,23619655-23619735,
23620426-23620501,23620674-23620696
Length = 128
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 343 GTLAISGIFLVAKAFAVMSWLSLWKRFTLPAAV 245
G LA+ IF + ++ W S+W+ FT A +
Sbjct: 63 GLLALGNIFFLTGIGLLLGWQSMWQLFTKKANI 95
>02_03_0247 -
16809742-16809780,16810070-16810298,16810381-16810551,
16810630-16811516,16811604-16812050,16812129-16812836
Length = 826
Score = 27.9 bits (59), Expect = 4.5
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = -3
Query: 220 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSE- 47
C S L P ++ SA + P+ C L P F L A+G P PE
Sbjct: 365 CASTELAENPTSIDSAVDHITEPTSCTLTVRVMP----TFTVLAAEGLAYKPTPETTVHG 420
Query: 46 LSVRAPCASLR 14
+RA CA ++
Sbjct: 421 AQLRADCAKVQ 431
>12_02_0591 + 20864861-20867329
Length = 822
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 257 AGSCHLVSEPGDVCIRETY 201
AG CHL EPG V +R +
Sbjct: 299 AGECHLAGEPGLVAVRRFF 317
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 27.5 bits (58), Expect = 6.0
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -3
Query: 193 PFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPE-VPSELSVRAPCASL 17
P T+S++T AV+ + + + + T LPA T APE +P+ S AP S
Sbjct: 310 PTTISTSTAAVSVSAETISSPVRPIVPTTTAAVLPASVTARSAPENIPAVTS--APANSS 367
Query: 16 RTLE 5
TL+
Sbjct: 368 STLK 371
>09_02_0322 -
7240125-7241568,7242043-7243253,7245782-7246144,
7246502-7246522
Length = 1012
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 97 SLPAKGTLTPAPEVPSELSVRAP 29
S+P + +L PAP S+L V AP
Sbjct: 870 SIPVQNSLPPAPPSASQLQVHAP 892
>03_06_0262 +
32730927-32731634,32731713-32732159,32732247-32733133,
32733212-32733382,32733465-32733753,32733839-32733877,
32733983-32734021
Length = 859
Score = 27.1 bits (57), Expect = 7.9
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = -3
Query: 220 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSE- 47
C S L P ++ SA + P+ C L P F L A+G P PE
Sbjct: 365 CASTELAENPTSVDSAVDHITEPTSCTLTVRVMP----TFTVLAAEGLAYKPTPETRVHG 420
Query: 46 LSVRAPCASLR 14
+RA CA ++
Sbjct: 421 AQLRADCAKVQ 431
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,413,320
Number of Sequences: 37544
Number of extensions: 321068
Number of successful extensions: 1017
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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