Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_L09
(483 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023) 31 0.50
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.87
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) 30 1.1
SB_8875| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 29 2.0
SB_30941| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0) 29 2.0
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_24975| Best HMM Match : ET (HMM E-Value=1) 28 3.5
>SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)
Length = 1016
Score = 31.1 bits (67), Expect = 0.50
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = -2
Query: 479 TLEEVQLSVQGVIVTIDEVRVTGGR*CTNLIFEHIVYSATDSVEVGYISDIWHI-SGGES 303
T + V L+ GV +T D+V +TG +L + + ++ D SD H+ S G
Sbjct: 388 TSDNVHLTSDGVHLTSDDVHLTGDD--VHLTSDDVHLTSDDG---NLTSDDVHLTSDGVH 442
Query: 302 LRCDVVVIVVEEIHFAG-SCHLVSE 231
L D V + +++H G HL SE
Sbjct: 443 LTSDGVHLTGDDVHLTGDDVHLTSE 467
Score = 29.9 bits (64), Expect = 1.1
Identities = 23/83 (27%), Positives = 42/83 (50%)
Frame = -2
Query: 479 TLEEVQLSVQGVIVTIDEVRVTGGR*CTNLIFEHIVYSATDSVEVGYISDIWHISGGESL 300
T ++V L+ + V +T D+V +T +L + + TD V + +D++ S G L
Sbjct: 458 TGDDVHLTSEHVHLTSDDVHLTSDD--VHLTSDD--GNLTDDVHLTS-NDVYLTSDGVHL 512
Query: 299 RCDVVVIVVEEIHFAGSCHLVSE 231
D V + +++H G HL S+
Sbjct: 513 TSDDVHLTGDDVHLTGDVHLTSD 535
>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 30.3 bits (65), Expect = 0.87
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +3
Query: 231 FGDKVTAAGKVNLFH---NDNHDITAKAFATRNMPDIANVPNFNTV 359
FGDK A + FH ND D + + TR + D++ +P + TV
Sbjct: 587 FGDKWIGANTIRAFHHTDNDGIDASENSNLTRIIFDLSTLPMYETV 632
>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
Length = 1878
Score = 29.9 bits (64), Expect = 1.1
Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -3
Query: 259 LPAAVT-LSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAK 83
LPAAV + P V+ TP L ATP VA LVK+K P L I K
Sbjct: 256 LPAAVPPIKTKPAAPSPVKATPTVAPLVKATPMVAP-----LVKAKLPQPLRILYICEEK 310
Query: 82 GTL 74
GT+
Sbjct: 311 GTV 313
>SB_8875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 191 RPRSKSHGYTHPRVRRQGDSC 253
RP S+SHG HPRV D+C
Sbjct: 92 RPTSQSHGNRHPRVPIDKDNC 112
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 194 PRSKSHGYTHPRVRRQGDSC 253
P + SH YTH VR GD+C
Sbjct: 260 PHALSHNYTHLAVRYYGDAC 279
>SB_30941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 194 PRSKSHGYTHPRVRRQGDSC 253
P + SH YTH VR GD+C
Sbjct: 260 PHALSHNYTHLAVRYYGDAC 279
>SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0)
Length = 646
Score = 29.1 bits (62), Expect = 2.0
Identities = 23/91 (25%), Positives = 44/91 (48%)
Frame = +3
Query: 9 RVRRDAHGALTLNSDGTSGAGVKVPFAGNDKNIVSAIGSLDLTNRQKLGAATAGVALDNV 188
R +DA + D T ++ F N + V G ++ R + + T +++ +
Sbjct: 402 RYMKDADKVVKKMVDQTHSNNLR-KFIDNRTHPVKYYGPINY--RTDVTSGTTHLSVVDA 458
Query: 189 NGHGVSLTDTHIPGFGDKVTAAGKVNLFHND 281
+G+GVSLT + FG K+ + K+ + +ND
Sbjct: 459 DGNGVSLTSSINKYFGSKIRSK-KLGIIYND 488
>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1234
Score = 29.1 bits (62), Expect = 2.0
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = -3
Query: 259 LPAAVTL-SPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAK 83
LP V+L S PG TP P +L+S TP+ + L K+ P++L+ S P
Sbjct: 1042 LPVPVSLTSKTPGPVSLTSKTPGPVSLTSKTPSPVS----LTSKTPGPVSLSSKTSGPVS 1097
Query: 82 GT-LTPAP 62
T TP P
Sbjct: 1098 LTSKTPGP 1105
>SB_24975| Best HMM Match : ET (HMM E-Value=1)
Length = 316
Score = 28.3 bits (60), Expect = 3.5
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = -3
Query: 289 SWLSLWKRFTLPAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIAL 110
SW+ L R + LSP+ + SV +TP LS + A+ S V P++L
Sbjct: 77 SWIPLKHRVPVTTNTPLSPSASVTASVSVTP-NTPLSPSASVTASVS----VTPNTPLSL 131
Query: 109 TIFLSLPAKGTLTP-APEVPS 50
+ S+ A ++TP P+ PS
Sbjct: 132 S--ASVTASVSVTPNTPQSPS 150
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,024,697
Number of Sequences: 59808
Number of extensions: 344497
Number of successful extensions: 1044
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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