Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_L07
         (393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb...    63   2e-11
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ...    56   2e-09
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S...    27   1.4  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    25   4.2  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    25   5.5  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    24   7.3  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    24   7.3  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    24   7.3  

>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 62.9 bits (146), Expect = 2e-11
 Identities = 31/54 (57%), Positives = 40/54 (74%)
 Frame = +1

Query: 49  IFPGYTHLQRAQPIRMEVISCLSHTWFLRDDVKRLEEQRSRLSRCPLGSGALAG 210
           I PGYTHLQRAQPIR      LSH + + +D+ RL++  SR++R PLG+GALAG
Sbjct: 154 IMPGYTHLQRAQPIRWSHF-LLSHAFSILNDLDRLKQIYSRVNRLPLGAGALAG 206


>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 461

 Score = 56.0 bits (129), Expect = 2e-09
 Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
 Frame = +1

Query: 40  EID-IFPGYTHLQRAQPIRMEVISCLSHTWFLRDDVKRLEEQRSRLSRCPLGSGALAG 210
           EID I  GYTHLQRAQP+R      +SH   L  D+ RL +  +R+S+ PLG+GALAG
Sbjct: 151 EIDVIMSGYTHLQRAQPVRWSHF-LMSHALPLLGDLGRLRQLYTRVSQLPLGAGALAG 207


>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 445

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 70  LQRAQPIRMEVISCLSHTWFLRDDVKRLEEQRSRL 174
           L+   P R  V  CLSH WF R   +  +   +R+
Sbjct: 402 LKTNPPDRFTVKQCLSHPWFARHSSRLTKLYETRI 436


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = +1

Query: 67  HLQRAQPIRMEVISCLSHTWFLRDDVKRLEEQRSRLSRCPLGSGALAGCAY 219
           HL R +   +           L   ++  E+    LS CPL SG L+  A+
Sbjct: 517 HLDRLRNSSLSTTDAAEIFLALESHIRTEEDVNYLLSNCPLHSGGLSVIAF 567


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 159 TEKSTITLSAWQRCLSWLCISIDRKRLAQSLGR 257
           T ++   LS    C+S L ++ D K + + LGR
Sbjct: 549 TRQTGFDLSVASECMSVLALATDLKDMRERLGR 581


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 301  GISLGFYGLHLTEQDLIYTDPR 366
            G+     G HLT  DLI+  PR
Sbjct: 1163 GVMAELMGKHLTHHDLIWVVPR 1184


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 155  SNLLTSSRRNQV*LRQEMTSIRIG*ARCRCVYPGNISIS 39
            +N+LT+ +R Q  L  ++TS ++    C   Y G I ++
Sbjct: 1142 NNILTTKQRTQKDLHDKLTSKKVPCTFCCWYYAGIIFLN 1180


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 99  FHTYWLSTLQVCISREYINFILARPLNFAFS 7
           FH   +++L VC++  +I F  +   +FA+S
Sbjct: 68  FHRRGIASLSVCVALHWIAFSCSVMCHFAWS 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,643,600
Number of Sequences: 5004
Number of extensions: 30017
Number of successful extensions: 64
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)