Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_L07
         (393 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142...    54   5e-08
06_03_0876 - 25593744-25594046,25594747-25594902,25594986-255950...    28   3.1  
03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561     28   3.1  
02_04_0193 - 20801959-20802583,20803372-20803448,20803530-208036...    27   5.4  
07_03_0647 - 20253380-20253505,20253718-20253727,20253864-202539...    27   7.1  
07_03_0642 - 20216944-20217069,20217282-20217291,20217428-202175...    27   7.1  
07_01_0110 - 830697-830800,831104-831231,831633-831706,831951-83...    26   9.4  

>03_02_0735 +
           10811326-10812342,10813199-10813555,10813962-10814225,
           10814894-10815010,10815796-10815944,10816315-10816606,
           10816681-10816845,10817106-10817357
          Length = 870

 Score = 53.6 bits (123), Expect = 5e-08
 Identities = 29/54 (53%), Positives = 35/54 (64%)
 Frame = +1

Query: 49  IFPGYTHLQRAQPIRMEVISCLSHTWFLRDDVKRLEEQRSRLSRCPLGSGALAG 210
           I PGYTHLQRAQP+ +  +  LS+   L  D  RL   R RL+ CPLG+ ALAG
Sbjct: 560 IVPGYTHLQRAQPVLLPHL-LLSYVEQLERDAGRLVNCRERLNFCPLGACALAG 612


>06_03_0876 -
           25593744-25594046,25594747-25594902,25594986-25595095,
           25595429-25595520,25595613-25595657,25595775-25595920,
           25596027-25596114,25596251-25596281,25596388-25596413,
           25596617-25596939
          Length = 439

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 288 PDH*WNFTGLLWSAPYRTGPYIYGSQESE 374
           P H W+  G  W+ PY   P + G+++ E
Sbjct: 364 PRHGWSSGGNNWAPPYAARPRLPGAEDDE 392


>03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561
          Length = 827

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 70  GVYIPGIYQFHFSTTTKLRIL 8
           G+Y+PG Y FHF+ ++ L ++
Sbjct: 169 GLYVPGHYTFHFTDSSILSLM 189


>02_04_0193 -
           20801959-20802583,20803372-20803448,20803530-20803646,
           20804147-20804250,20804359-20804428,20804547-20804644,
           20804747-20804840,20805269-20805359,20805453-20805545,
           20805635-20805960,20806162-20806641
          Length = 724

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 23  SGRAKMKLIYSRDIHTCNVLSQYVWKSFLA*VILGFFATTLKD*K 157
           SG+A + +++   I + N +S  +W +     I+  FA+ L+D K
Sbjct: 107 SGKASLPILFPPSISSSNRISIAIWINRWLTSIMNIFASKLRDCK 151


>07_03_0647 -
           20253380-20253505,20253718-20253727,20253864-20253977,
           20254063-20254382
          Length = 189

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 103 ISCLSHTWFLRDDVKRLEEQRSRLSRCPLGS 195
           +S L+H W+ R   KR E +  R    P+ S
Sbjct: 16  LSVLNHVWYRRQKTKRSEGKVKRSDSVPVAS 46


>07_03_0642 -
           20216944-20217069,20217282-20217291,20217428-20217541,
           20217627-20217946
          Length = 189

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 103 ISCLSHTWFLRDDVKRLEEQRSRLSRCPLGS 195
           +S L+H W+ R   KR E +  R    P+ S
Sbjct: 16  LSVLNHVWYRRQKTKRSEGKVKRSDSVPVAS 46


>07_01_0110 -
           830697-830800,831104-831231,831633-831706,831951-832034
          Length = 129

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 67  HLQRAQPIRMEVISCLSHTWFLRDDVKRLEEQRSRLSRCPLGSGALAGCAYQS 225
           H Q+  P+ ++ +  L+    LRD  KRL +++   S  P   G  +   + S
Sbjct: 26  HHQQVDPLLLKNVENLAKRQLLRDLTKRLAKEKRASSVAPTFRGIASSWPFAS 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,008,859
Number of Sequences: 37544
Number of extensions: 212350
Number of successful extensions: 403
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)