Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_L07
         (393 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000264-3|AAC71126.1|   82|Caenorhabditis elegans Hypothetical ...    27   3.6  
AL110485-4|CAB60350.1|  220|Caenorhabditis elegans Hypothetical ...    27   4.8  
Z92822-6|CAB07303.1|  172|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U70852-14|AAM98014.1|  783|Caenorhabditis elegans Gei-4(four) in...    27   6.3  
U70852-13|AAM98015.1|  788|Caenorhabditis elegans Gei-4(four) in...    27   6.3  
U34354-1|AAC47127.1|  171|Caenorhabditis elegans cyclophilin iso...    27   6.3  
AL117206-1|CAB60446.1|  644|Caenorhabditis elegans Hypothetical ...    26   8.4  

>AF000264-3|AAC71126.1|   82|Caenorhabditis elegans Hypothetical
           protein F43E2.9 protein.
          Length = 82

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 147 FNVVAKKPSMT*ARNDFHTYWLSTLQVCISREYINFILARPL 22
           F++V + P  T  R  FH  WLS+L      E    + A+PL
Sbjct: 17  FDIVPQPPKSTVTR--FHQQWLSSLANARDDELQTILYAKPL 56


>AL110485-4|CAB60350.1|  220|Caenorhabditis elegans Hypothetical
           protein Y46G5A.5 protein.
          Length = 220

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 268 PNHVALLQIISGISLGFYGLHLTEQDLIYTDPRNRNSSFL 387
           P+H+ LLQ+ + I +  + LHL   DL       ++S++L
Sbjct: 94  PDHLFLLQLSAVIDIASHWLHLHATDLSGATSHKQSSNWL 133


>Z92822-6|CAB07303.1|  172|Caenorhabditis elegans Hypothetical
           protein ZK520.5 protein.
          Length = 172

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 54  PGIYTPATCSANTYGSHF 107
           PG+ + A C ANT GS F
Sbjct: 102 PGVLSMANCGANTNGSQF 119


>U70852-14|AAM98014.1|  783|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 4, isoform a protein.
          Length = 783

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 286 LQIISGISLGFYGLHLTEQDLIYTDPRNRNS 378
           L I+  + +GF  ++ ++Q   Y+DP  RN+
Sbjct: 418 LDILERLGVGFKSVYASKQYTQYSDPNTRNN 448


>U70852-13|AAM98015.1|  788|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 4, isoform b protein.
          Length = 788

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 286 LQIISGISLGFYGLHLTEQDLIYTDPRNRNS 378
           L I+  + +GF  ++ ++Q   Y+DP  RN+
Sbjct: 423 LDILERLGVGFKSVYASKQYTQYSDPNTRNN 453


>U34354-1|AAC47127.1|  171|Caenorhabditis elegans cyclophilin
           isoform 2 (cyp-2) protein.
          Length = 171

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 54  PGIYTPATCSANTYGSHF 107
           PG+ + A C ANT GS F
Sbjct: 101 PGVLSMANCGANTNGSQF 118


>AL117206-1|CAB60446.1|  644|Caenorhabditis elegans Hypothetical
           protein Y67A10A.1 protein.
          Length = 644

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 108 RNDFHTYWLSTLQVCISREYINFILARPL 22
           +ND  T  LS L +C+S   I  ++ RPL
Sbjct: 233 KNDLVTVSLSALALCLSTMEIKVLVLRPL 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,175,876
Number of Sequences: 27780
Number of extensions: 170927
Number of successful extensions: 442
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)