Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_L06
         (371 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-13|CAB55128.1|  286|Caenorhabditis elegans Hypothetical...    28   1.9  
AF016425-6|AAY86242.1|  104|Caenorhabditis elegans Hypothetical ...    28   2.4  
Z69903-1|CAA93772.1|  137|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U10401-5|AAA19060.1|  238|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AF025466-2|AAB71033.1|  261|Caenorhabditis elegans Hypothetical ...    27   5.7  
U28741-7|AAO38645.1|  721|Caenorhabditis elegans Synapse defecti...    26   7.5  
U28741-6|AAO21428.1|  942|Caenorhabditis elegans Synapse defecti...    26   7.5  
U28741-5|AAO38644.1|  987|Caenorhabditis elegans Synapse defecti...    26   7.5  
AF546880-1|AAN38752.1|  942|Caenorhabditis elegans axon identity...    26   7.5  
Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical pr...    26   9.9  
Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr...    26   9.9  
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n...    26   9.9  
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    26   9.9  

>AL117204-13|CAB55128.1|  286|Caenorhabditis elegans Hypothetical
           protein Y116A8C.22 protein.
          Length = 286

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 176 CTNCQLRRHLRCYGQGTYNWKRKSQAQC 259
           CT CQ   HL+C G  +  W   SQ QC
Sbjct: 256 CTKCQKWVHLKCTGIRSKQW--NSQFQC 281


>AF016425-6|AAY86242.1|  104|Caenorhabditis elegans Hypothetical
           protein F59A7.11 protein.
          Length = 104

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 48  LVSVLLVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTS 206
           L++ LL  +    V+   PG   +  ED  +     R RR  G  TV +DG++
Sbjct: 4   LINSLLFTIAILAVVWGYPGQQADHVEDLTKNRNEPRARRDLGTETVRADGSA 56


>Z69903-1|CAA93772.1|  137|Caenorhabditis elegans Hypothetical
           protein F46F2.3 protein.
          Length = 137

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 137 GAVGQLQGAPASGCTNCQLRR 199
           G +G L GAPA GC  C   R
Sbjct: 22  GGLGGLFGAPAGGCDPCAAAR 42


>U10401-5|AAA19060.1|  238|Caenorhabditis elegans Hypothetical
           protein T20B12.7 protein.
          Length = 238

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 143 VGQLQGAPASGCTNCQLRRHLRC 211
           +GQ+   P S C NC L    RC
Sbjct: 191 MGQIAAEPKSSCGNCSLGDAFRC 213


>AF025466-2|AAB71033.1|  261|Caenorhabditis elegans Hypothetical
           protein T23F4.1 protein.
          Length = 261

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 227 YNWKRKSQAQCPW 265
           Y WKRKS+++C W
Sbjct: 91  YLWKRKSRSRCEW 103


>U28741-7|AAO38645.1|  721|Caenorhabditis elegans Synapse defective
           protein 1, isoformc protein.
          Length = 721

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +3

Query: 135 PEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAG 314
           P + A++ VRR     +     TS  M  +P +         LGS+  + +  L  ++A 
Sbjct: 68  PPRLASATVRRTESFNSAPGVSTSAPMYTLPRSSTAVPPPDILGSIPYSARDPLMRSSAD 127

Query: 315 LAYDNVNG 338
           L YD + G
Sbjct: 128 LPYDPMTG 135


>U28741-6|AAO21428.1|  942|Caenorhabditis elegans Synapse defective
           protein 1, isoformb protein.
          Length = 942

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +3

Query: 135 PEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAG 314
           P + A++ VRR     +     TS  M  +P +         LGS+  + +  L  ++A 
Sbjct: 266 PPRLASATVRRTESFNSAPGVSTSAPMYTLPRSSTAVPPPDILGSIPYSARDPLMRSSAD 325

Query: 315 LAYDNVNG 338
           L YD + G
Sbjct: 326 LPYDPMTG 333


>U28741-5|AAO38644.1|  987|Caenorhabditis elegans Synapse defective
           protein 1, isoforma protein.
          Length = 987

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +3

Query: 135 PEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAG 314
           P + A++ VRR     +     TS  M  +P +         LGS+  + +  L  ++A 
Sbjct: 334 PPRLASATVRRTESFNSAPGVSTSAPMYTLPRSSTAVPPPDILGSIPYSARDPLMRSSAD 393

Query: 315 LAYDNVNG 338
           L YD + G
Sbjct: 394 LPYDPMTG 401


>AF546880-1|AAN38752.1|  942|Caenorhabditis elegans axon identity
           specification proteinSYD-1 protein.
          Length = 942

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +3

Query: 135 PEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAG 314
           P + A++ VRR     +     TS  M  +P +         LGS+  + +  L  ++A 
Sbjct: 266 PPRLASATVRRTESFNSAPGVSTSAPMYTLPRSSTAVPPPDILGSIPYSARDPLMRSSAD 325

Query: 315 LAYDNVNG 338
           L YD + G
Sbjct: 326 LPYDPMTG 333


>Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical
           protein H25K10.6 protein.
          Length = 518

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +1

Query: 58  FFWSASTAGTCSLKSLVTTLNNMRISRSSGPTPGCA 165
           F W  ST   C L SL    N +R S SS P   CA
Sbjct: 15  FAWCRSTR-QCQLSSLSPRRNPLRGSFSSRPYHSCA 49


>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical protein
            C01C7.1 protein.
          Length = 1043

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 279  TNQMKLGAATAGLAYDNVNGHGA 347
            T Q  L      LAYDN+NG GA
Sbjct: 989  TRQFPLVIDERNLAYDNLNGFGA 1011


>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
            non-receptor tyrosinekinase protein.
          Length = 1043

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 279  TNQMKLGAATAGLAYDNVNGHGA 347
            T Q  L      LAYDN+NG GA
Sbjct: 989  TRQFPLVIDERNLAYDNLNGFGA 1011


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
           protein H02F09.3 protein.
          Length = 1275

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +1

Query: 10  PQANTQRCSPSYSSYQFFWSASTAGTCSLKSLVTTLNNMRISRSSGPTPGCAG 168
           P  +T     S S+Y    S+STAG  S  +  +T   +  S SSGPT    G
Sbjct: 456 PSQSTSLSMSSLSTYTP--SSSTAGATSPATQQSTKPTIGTSMSSGPTTVAPG 506


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,572,874
Number of Sequences: 27780
Number of extensions: 161345
Number of successful extensions: 486
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)