Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_L05
(436 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 35 0.006
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos... 26 2.2
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 26 2.2
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 26 2.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 2.9
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 25 3.8
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 3.8
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 25 6.7
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 24 8.8
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 24 8.8
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 24 8.8
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 24 8.8
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 34.7 bits (76), Expect = 0.006
Identities = 22/73 (30%), Positives = 34/73 (46%)
Frame = +3
Query: 213 MTKAQQTLSAKNYPSWVHVTRVLQGTEPAAFKQYFSTWRDVGMSHSRLV*KQ*MVNDCHR 392
+++ L+ NY H+TRV GT+ + S + D S + + Q NDC
Sbjct: 675 ISQVNSLLNDYNYNRQSHITRVYSGTDDGS---SVSIFEDTSSSTKQKIFDQPTTNDCDV 731
Query: 393 HRIRIYSLSSSVK 431
R R YS S+ +K
Sbjct: 732 MRPRQYSYSAGMK 744
>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 26.2 bits (55), Expect = 2.2
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 171 WIGKQSTEKEKSEAMTKAQQTLSAKNYPSWVHVTR 275
W GK +E +K A + S K + W +TR
Sbjct: 304 WTGKNISETQKIVAYSHLYSFTSVKCFVHWAQITR 338
>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 624
Score = 26.2 bits (55), Expect = 2.2
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Frame = +3
Query: 6 DQAFERNEEQTVSLSEVSD---SSGKVKATALAKPLRQEQLKPQESYILDTVSGNIYVWI 176
+ + NEEQT L + D SS +++L P E + S W
Sbjct: 18 ENSLNTNEEQTNPLESLRDGWASSNSSSSSSLLLPDENEGNEVFGSLKGLVTQSKFGQWA 77
Query: 177 GKQS----TEKEKSEAMTKAQQTLSAKNYPSWV 263
K S + KSE+++K + S PSWV
Sbjct: 78 NKLSKSLQARRRKSESISKPRVYYSVFMAPSWV 110
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 25.8 bits (54), Expect = 2.9
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +3
Query: 120 KPQESYILDTVSGNIYVWIGKQSTEKEKSEAMTKAQQTLSAKNYPSWVHVTRVLQG-TEP 296
+PQ S ++ V + +Q E+E+++ KAQ AK V RV++G T P
Sbjct: 636 RPQGSALVKLVDAEELIAAREQKLEEERAKQAKKAQ----AKAEQEKKQVERVMKGKTSP 691
Query: 297 A----AFKQYFS 320
+ FK+Y S
Sbjct: 692 SEMFKMFKEYLS 703
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 2.9
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 84 TALAKPLRQEQLKPQESYILDTVSGNIYVWIGKQS 188
T L K + ++ KP +LD GN W G S
Sbjct: 1760 TRLKKTVTTDKSKPIAGRVLDASDGNSSAWYGNLS 1794
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 3.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 301 PSNNTSRPGGTWACHIPDWSRSSK 372
PS+N ++P + C+IP ++ S K
Sbjct: 263 PSSNAAKPSNSEECNIPKFNSSFK 286
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.4 bits (53), Expect = 3.8
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -2
Query: 231 FAGLLSWLQTFPFQSTASRSIRRCSHLQYPGCTTPVVSTV 112
FA L+ + F F + R I HL+ GC + TV
Sbjct: 191 FAFLVGSMSRFNFVMVSDRFIEEIEHLEKSGCDSRQKETV 230
Score = 25.4 bits (53), Expect = 3.8
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 63 SSGKVKATALAKPLRQEQLKPQESYILDTVSGNIYVWIGKQSTEKEKSEAMTKAQQTLSA 242
SSG + ++ L ++ +K E Y+L T I +WI +Q EK ++ + S+
Sbjct: 581 SSGLKMSKSVISCLSRKLVKGSE-YLLRTYHEVIRIWISQQEAVIEKRNSVLSNKSCASS 639
Query: 243 K-NYPSWV 263
+ N P+ V
Sbjct: 640 ESNTPASV 647
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 24.6 bits (51), Expect = 6.7
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = -3
Query: 212 GFRLFLFSRLL--PDPYVDVPTYSIQDV 135
G RL +S L PYV VP YSI+ +
Sbjct: 222 GLRLLAYSLLFMYQFPYVSVPIYSIRQM 249
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 24.2 bits (50), Expect = 8.8
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 186 TASRSIRRCSHLQYPGCTTPVVSTVP 109
TA R C HL+Y PV+ +P
Sbjct: 1798 TAVSESRSCCHLRYLNGAAPVIYGIP 1823
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 24.2 bits (50), Expect = 8.8
Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 162 CSHLQYPGCTTPVVSTVPDAM-AWQAPS 82
C+ +P C P ++T+P + W+ P+
Sbjct: 428 CNSYWHPDCLNPPLATLPSNLRKWKCPN 455
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 24.2 bits (50), Expect = 8.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 209 SHDKSPANSVS*KLSILGPRNQSTAG 286
S + PA+ V L LGP Q+TAG
Sbjct: 2011 SEEFFPADLVILALGFLGPEEQATAG 2036
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 24.2 bits (50), Expect = 8.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 286 ALSRLPSNNTSRPGGTWACHIPDWSRSSKWLM 381
AL P+ +S + H+ DWSR S+W M
Sbjct: 482 ALYASPATESSPGVIYYKAHV-DWSRKSEWAM 512
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,855,172
Number of Sequences: 5004
Number of extensions: 35430
Number of successful extensions: 103
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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