Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_L04
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    27   2.0  
SPAC9.02c |||N-acetyltransferase|Schizosaccharomyces pombe|chr 1...    26   3.5  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   4.6  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    25   6.1  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    25   6.1  
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    25   8.1  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    25   8.1  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    25   8.1  

>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -3

Query: 324 VTHSGSRRHELSQP-PGIVSRPGSPPCRSRGAPTRRCP 214
           ++ S S  H  SQ  PG  S P  P   + G   ++CP
Sbjct: 66  ISSSSSEPHHTSQSTPGETSSPVCPVSGAHGGADKKCP 103


>SPAC9.02c |||N-acetyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 165

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 18/70 (25%), Positives = 27/70 (38%)
 Frame = +3

Query: 216 DISESEHLENGMAESLDERRFQEAERARVSEILNESRDAPDNEINLDDPCMKVHCSAGRV 395
           +I   E  E      L+   F EAERA  + I +  + AP+ ++ L  P        G V
Sbjct: 3   NIRNIERSEVEEVSKLEAICFPEAERASFARIKDRVKRAPEIQLGLFAPTQHTSTLIGHV 62

Query: 396 CEINEHGEAI 425
                  E +
Sbjct: 63  LTSRTGSETV 72


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +3

Query: 378  CSAGRVCEINEHGEAICNCIKEC 446
            C+A R+C++ E       C+ +C
Sbjct: 974  CTASRICKVREIASLSLTCLLDC 996


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -2

Query: 361 GSSRLISLSGASRDSFRISETRALSAS 281
           G+ +L     +SRD+FR ++T+A S+S
Sbjct: 47  GNKKLKESQFSSRDNFRTTQTQASSSS 73


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
 Frame = +3

Query: 195 SAGLPRGDISESEHLEN-GMAESLDERRFQEAERARVSEILNESRDAPDNEINLDDPCMK 371
           S G     IS  E  +N G+ E  D     E++  +  E  +     P     LDD  + 
Sbjct: 12  SNGFSEEYISHPERNDNQGIVEITDLVFSSESKLTQRKESRDSKTFVPSFLEELDDDHLH 71

Query: 372 VHCSAGRVCEINEHGEAICNCIKEC 446
              + G +  +N  GE +   +++C
Sbjct: 72  ELVTNGGILYMNSLGEGVSGSVRKC 96


>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 252 AESLDERRFQEAERARVSEILNESRDAPDNEIN 350
           A+ LDER F+  E    S+ L  ++DA  N IN
Sbjct: 450 AQFLDEREFETDEEEEESQYLLSTKDA-INAIN 481


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 379 AAPAVSVRSTSTGKLSATASRSVHTKPTLG 468
           ++P+ +  STST   S+  S  + T+PT G
Sbjct: 464 SSPSGTNSSTSTSSTSSKHSTGISTEPTTG 493


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 487 KFVHTLRLESVSYGHSLMQLQIAS 416
           +F H LRL+ V+  H +   +IAS
Sbjct: 294 RFSHELRLKPVAVAHGIKNSEIAS 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,780,615
Number of Sequences: 5004
Number of extensions: 31417
Number of successful extensions: 82
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)