Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_L03
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    51   7e-08
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   0.97 
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    26   3.0  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   3.9  
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    25   3.9  
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    25   6.8  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    24   9.0  

>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 51.2 bits (117), Expect = 7e-08
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
 Frame = +3

Query: 66  KVYNFGAGPAKLPEEVYEIIRSELTNFENSGISLLETSHRTATYMNLNVEVQNVVRRLLD 245
           +V NF AGPA +   V E    +  NF+  G+ + E SHR+     +    ++  R+L +
Sbjct: 6   EVVNFAAGPAAMITSVVEEFGKDFVNFQGLGMGVAEISHRSKQGSGIVTSAESNFRKLYN 65

Query: 246 VPSNYKIXXXXXXXXXXXXXVPLNLI---------SRTGTADYVVTGAWS 368
           +P N+ I                N+          +++  A+Y++TGAWS
Sbjct: 66  IPENFHILFMQGGGTEQFAACLYNVYAHHALKNGNAKSLVANYIITGAWS 115


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.5 bits (58), Expect = 0.97
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 123  IRSELTNFENSGISLLETSHRTATYMNLNVEVQNVVRRLLDVPSNYKI 266
            + +EL   E S   LLE + R + + N    ++  ++ L DVP+  K+
Sbjct: 2671 VLTELAKHEGSSELLLECAWRISDWSNNRESLEVAIKSLSDVPTPRKL 2718


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 129 SELTNFENSGISLLETSHRTATYMNLNVEVQNVVRRLLDV 248
           S+ T ++ SG+  L T HR      LN +   ++  +LD+
Sbjct: 212 SQSTMYKKSGLKTLVTLHRDLGIDKLNQDEVTIITAVLDL 251


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 432 DQSLVKPYSLFHIFSLPSQP*LTRHQSLRSQLCQ 331
           D S++K  SL  + SLPSQP ++  Q LR    Q
Sbjct: 2   DLSVIKAASL-DLESLPSQPTVSSFQQLRETFIQ 34


>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 129 SELTNFENSGISLLETSHRTATYMNLNVEVQ-NVVR 233
           S + NF    +S L+ S  T  Y N +VEV+ N+++
Sbjct: 121 SFVKNFGPGFVSTLQESFGTGVYYNTHVEVEGNIIK 156


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 96  KLPEEVYEIIRSE--LTNFENSGISLLETSHRTATYMN 203
           ++P+   E+++ E   T+F  +  +LL+  HR  TY N
Sbjct: 357 EIPQLAQELVQLERHYTHFAKAYTALLQEIHRRQTYEN 394


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +3

Query: 99  LPEEVYEIIRSELTNFENSGISLLETSHRTATYMNLNVEVQNVVRRLLDV 248
           L E    ++   LTN +N G ++ E +   AT      E+Q  V  + +V
Sbjct: 732 LQEGASSMVYYSLTNLDNPGATVNEAAKTAATIEQNEHEIQTSVDPISNV 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,615,363
Number of Sequences: 5004
Number of extensions: 29015
Number of successful extensions: 60
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)