Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_L03
         (441 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0398 + 3092577-3093857                                           71   3e-13
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925           35   0.033
03_05_0984 + 29422139-29422282,29422386-29422488,29422650-294227...    28   3.8  
05_05_0322 + 24094831-24094992,24095147-24095216,24096184-240963...    27   6.7  
04_04_1535 + 34205426-34205593,34205697-34206869                       27   6.7  
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583...    27   8.8  

>03_01_0398 + 3092577-3093857
          Length = 426

 Score = 71.3 bits (167), Expect = 3e-13
 Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
 Frame = +3

Query: 69  VYNFGAGPAKLPEEVYEIIRSELTNFENSGISLLETSHRTATYMNLNVEVQNVVRRLLDV 248
           VYNF AGPA LP  V +  ++EL ++  SG+S++E SHR   +     + +  +R LL V
Sbjct: 65  VYNFAAGPATLPLSVLQRAQAELVDYRGSGMSIMEMSHRGKEFDAAIKKAEADLRALLAV 124

Query: 249 PSNYKIXXXXXXXXXXXXXVPLNL-ISRTGTADYVVTGAWS 368
           P  +++              PLNL  S +  AD+VV+G+WS
Sbjct: 125 PDTHEVLFLQGGATSQFAAAPLNLCASPSDPADFVVSGSWS 165


>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
          Length = 962

 Score = 34.7 bits (76), Expect = 0.033
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +3

Query: 60  MSKVYNFGAGPAKLPEEVYEIIRSELTNFENSGISLLETSHRT-ATYMNLNVEVQNVVRR 236
           +SK+Y  G   A+LP +V E IR ELT  EN  I  L+T+H T         EV+ +   
Sbjct: 28  VSKLYQKGKSLAELPGKVEE-IRMELTTMENV-IEQLDTAHLTDKVIKGWIAEVRKLAYH 85

Query: 237 LLDVPSNY 260
           + DV   Y
Sbjct: 86  VEDVMDKY 93


>03_05_0984 +
           29422139-29422282,29422386-29422488,29422650-29422738,
           29423635-29423746,29423992-29424182
          Length = 212

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +3

Query: 135 LTNFENSGISLLETSHRTATYMNLNVEVQNVVRRLLDVPSN 257
           L  F  S  S+  TSH  A    L VEV  +  RL +V SN
Sbjct: 130 LQRFNYSVTSMRSTSHNLAEVRPLQVEVGELKGRLTEVISN 170


>05_05_0322 +
           24094831-24094992,24095147-24095216,24096184-24096307,
           24096403-24096502,24096598-24096825,24096916-24097041,
           24097092-24097376,24097490-24097648,24097751-24097929,
           24098078-24098210
          Length = 521

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 105 EEVYEIIRSELTNFENSGISLLETSHRTATYMNLNVEVQNVVRRLL 242
           E++Y   R+     E   + L +   R   YM+  VEV   +R +L
Sbjct: 260 EDIYNFYRTAQICSETDSVVLAQLERRPTDYMSSQVEVNPKMRAIL 305


>04_04_1535 + 34205426-34205593,34205697-34206869
          Length = 446

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -3

Query: 157 PEFSKFVNS--DLMIS*TSSGNFAGPAPKLYTLDMFY 53
           P  S FV++  DL +   +S NF+G  P L  L  FY
Sbjct: 147 PSLSGFVDAFPDLALFHANSNNFSGEVPDLTGLPYFY 183


>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
            14058450-14058570,14058926-14059320,14059410-14059534,
            14059646-14059876,14060012-14060484,14060587-14060693,
            14060842-14061172,14061222-14061250,14061345-14061901,
            14062170-14062255,14062344-14062406,14062646-14063001,
            14063101-14063356
          Length = 1272

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 57   NMSKVYNFGAGPAKLP-EEVYEIIRSELTNFE-NSGISLLETSHRTATYMNLNVEVQN 224
            ++S VY  G G   +   E   ++  ++ + E NSG   L  SH TAT    NVEV N
Sbjct: 1036 SVSSVYEIGKGIRVINLNEADNLVDVDINSSEVNSGTVDL-ISHTTATLHKRNVEVAN 1092


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,788,578
Number of Sequences: 37544
Number of extensions: 167045
Number of successful extensions: 294
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)