Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_L03
         (441 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30238| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   1e-05
SB_24978| Best HMM Match : ChaC (HMM E-Value=0)                        27   5.2  
SB_51314| Best HMM Match : FAD_binding_7 (HMM E-Value=0)               27   9.1  

>SB_30238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 19/35 (54%), Positives = 23/35 (65%)
 Frame = +3

Query: 333 GTADYVVTGAWSXXXXXXXXXYGKVNMVLPATDRH 437
           G+ADY+VTGAWS         YGKVN+VLP T  +
Sbjct: 42  GSADYIVTGAWSAKAVKEAEKYGKVNLVLPKTSTY 76



 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 19/36 (52%), Positives = 24/36 (66%)
 Frame = +3

Query: 66  KVYNFGAGPAKLPEEVYEIIRSELTNFENSGISLLE 173
           KV NF  GPAKLPE V +  + E  N+ N GIS++E
Sbjct: 5   KVINFAPGPAKLPEVVLKKAQEEFLNYGNLGISVME 40


>SB_24978| Best HMM Match : ChaC (HMM E-Value=0)
          Length = 189

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 78  FGAGPAKLPEEVYEIIRSELTNFENS 155
           F  GPA LPE  Y+I  S+ T+ +NS
Sbjct: 118 FYLGPAPLPEIAYQIAHSKGTSGKNS 143


>SB_51314| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
          Length = 524

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 186 TATYMNLNVEVQNVVRRLLDVPSNYK 263
           T T     VE Q+ VR L+D+P N K
Sbjct: 163 TYTQFRKGVENQSTVRNLIDMPKNLK 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,626,800
Number of Sequences: 59808
Number of extensions: 207884
Number of successful extensions: 375
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)