Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_L03
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81516-3|CAB04204.1|  370|Caenorhabditis elegans Hypothetical pr...    91   3e-19
AL033514-8|CAA22097.2|  715|Caenorhabditis elegans Hypothetical ...    27   4.6  

>Z81516-3|CAB04204.1|  370|Caenorhabditis elegans Hypothetical
           protein F26H9.5 protein.
          Length = 370

 Score = 91.1 bits (216), Expect = 3e-19
 Identities = 47/122 (38%), Positives = 65/122 (53%)
 Frame = +3

Query: 75  NFGAGPAKLPEEVYEIIRSELTNFENSGISLLETSHRTATYMNLNVEVQNVVRRLLDVPS 254
           NF AGPAKLPEEV   ++ E  NF N G+S++E SHR+  +  L  E  +++R L++VP 
Sbjct: 9   NFAAGPAKLPEEVLLKMQEEQLNFNNLGVSVIEMSHRSKEFGALLNETISLIRELMNVPD 68

Query: 255 NYKIXXXXXXXXXXXXXVPLNLISRTGTADYVVTGAWSXXXXXXXXXYGKVNMVLPATDR 434
           N++I             +PLNL      ADY+VTGAWS         Y  V  V   +  
Sbjct: 69  NFEILFMQGGGTGQFAAIPLNLKGDHEHADYIVTGAWSSKAADEAGKYINVKKVFQPSKP 128

Query: 435 HV 440
           +V
Sbjct: 129 YV 130


>AL033514-8|CAA22097.2|  715|Caenorhabditis elegans Hypothetical
           protein Y75B8A.8 protein.
          Length = 715

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 90  PAKLPEEVYEIIRSELTNFENSGISLLE--TSHRTATYMNLNVEVQNVVRRLLDVPSNY 260
           P  + +  Y   + ELTNF+ + ++LL    +    T+     EV NV  R+    + Y
Sbjct: 45  PQGITQAHYHQYKQELTNFQQNRLALLNQALNRGQLTHEQFQQEVHNVNERIRGAMTQY 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,733,055
Number of Sequences: 27780
Number of extensions: 156584
Number of successful extensions: 307
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)