Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K22
         (307 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    25   3.3  
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    25   3.3  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    24   4.4  
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    24   5.8  
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    24   5.8  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    24   5.8  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    24   5.8  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    23   7.7  
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    23   7.7  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    23   7.7  

>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 305 SQSSCSGSQLHLVSEIYGAKGTEPV 231
           S    +GS +H+VSE  G KG++ +
Sbjct: 754 STPDTTGSDIHIVSEKRGKKGSKVI 778


>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 170 CQLRRHLRCYGQGTYNWKR 226
           C ++R L C  Q TYN +R
Sbjct: 186 CTVQRGLECLSQSTYNVER 204


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 108 YEDQPEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGN 224
           YE  PE + N   +R A AL  NS+   G+   V    N
Sbjct: 227 YEQDPEGFVNPYSKRGAAAL-ANSENNKGSEAGVSAKTN 264


>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 13  RCSPSYSSYQFFWSASTAGTCSLKSLVTTL 102
           + + SYS YQ+F SA     C    ++T L
Sbjct: 259 KLTDSYSLYQYFISAPDDLACKCLDMLTLL 288


>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 28  YSSYQFFWSASTAGTCSL 81
           Y+ +  FW   T G C+L
Sbjct: 126 YTGFALFWGGITVGLCNL 143


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 49  WSASTAGTCSLKSLVTTLNNMRISRSSGP 135
           W      T  LKSL    NN+R+   S P
Sbjct: 99  WDPLQLSTARLKSLCLYRNNVRVLNISNP 127


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 179 RRHLRCYGQGTYNWKRTSQAQCPWLR 256
           + HL  YG+ TYN    +  Q  W +
Sbjct: 174 KNHLEVYGRTTYNIVLHNSWQASWFK 199


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 113 GSAGAVGQLQGAPASGCTNCQLRRHLRCYGQGTYNWKRT 229
           G+  A GQL        T+ + R HL C+G  + N K T
Sbjct: 226 GALSAPGQLYTV-----TDSKARVHLECFGSSSSNNKTT 259


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 132 PTAPADPHIVQCS 94
           PT+PA+PHI+  S
Sbjct: 464 PTSPANPHIIHGS 476


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 61  TAGTCSLKSLVTTLNNMRISRSSGPTPGCAGKR 159
           T  +  +KSLV   +   IS+ +GP    AGK+
Sbjct: 85  TGKSTLIKSLVRRYSKYTISQITGPITVVAGKK 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,273,902
Number of Sequences: 5004
Number of extensions: 22136
Number of successful extensions: 63
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)