Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_K22
(307 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440... 29 0.95
01_06_0996 + 33667663-33667900,33668019-33668091,33668785-336688... 29 0.95
07_01_0476 - 3593555-3594253,3594684-3594850,3594866-3594964,359... 28 1.3
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 28 1.3
03_02_0798 - 11321590-11321685,11321802-11321888,11321972-113220... 28 1.7
09_06_0150 - 21225086-21225511,21225775-21226125,21227180-212277... 27 2.9
02_04_0256 + 21331396-21332268 27 2.9
11_04_0090 - 13391028-13391117,13391369-13391502,13391532-133916... 26 5.1
08_02_1583 + 28036125-28037030,28037411-28037656 26 5.1
08_01_0759 - 7199085-7199414 26 5.1
08_01_0755 - 7159471-7160124 26 5.1
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 26 5.1
12_01_0344 + 2647044-2647238,2647452-2647553,2647789-2647911,264... 26 6.7
02_05_0432 + 28936293-28936796,28937382-28939250 26 6.7
02_01_0669 + 4974567-4974610,4975142-4975211,4975355-4975429 26 6.7
01_06_1077 + 34372486-34372697,34373476-34373547,34373892-343740... 26 6.7
11_06_0346 - 22549699-22549721,22549857-22549999,22550100-225521... 25 8.9
09_04_0454 + 17722587-17722856,17723228-17723362 25 8.9
07_03_0242 + 15700336-15700401,15700481-15700649,15701828-15702024 25 8.9
07_03_0192 + 14935366-14935640,14935769-14935895,14936738-14936959 25 8.9
02_05_1219 + 35011571-35011897,35012008-35013780,35013915-350140... 25 8.9
>08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,
44090-44322,45308-45412,45531-45705,46443-46658
Length = 977
Score = 28.7 bits (61), Expect = 0.95
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 48 LVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTSGAMVKV 209
L G+ SR V P + ++ Y D+ EQW R R + L ++ + + G+ +V
Sbjct: 886 LTGLGSRIV---SPVFGLQSYSDKGEQWFQLR-RPDSKQLQIDGESSKGSRAEV 935
>01_06_0996 +
33667663-33667900,33668019-33668091,33668785-33668841,
33668970-33669067,33669482-33669637,33669744-33670366,
33670484-33670560,33671551-33671805,33671950-33672067,
33672174-33672345,33672434-33672975
Length = 802
Score = 28.7 bits (61), Expect = 0.95
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 46 FWSASTA-GTCSLKSLVTTLNNMRISRSSGPT 138
FW ST CS L+ LNN +SR +GP+
Sbjct: 40 FWPRSTKWALCSEVDLIGPLNNWTLSRLTGPS 71
>07_01_0476 -
3593555-3594253,3594684-3594850,3594866-3594964,
3595620-3595806,3595880-3595948,3596551-3596752,
3597124-3597362,3598374-3598637
Length = 641
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 137 LQGAPASGCTNCQLRRHLRCYGQGTYNWKRT 229
L G P G N + +LRCYG +Y+ +T
Sbjct: 302 LNGVPGCGFLNHAINLYLRCYGSLSYHGIQT 332
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 153 AGAPWSWPTAPADPHIVQCSNQALQRARTG 64
AG PW+W +PA + +C A +R TG
Sbjct: 408 AGGPWTWRESPASRAMQKC--PACKRTHTG 435
>03_02_0798 -
11321590-11321685,11321802-11321888,11321972-11322082,
11322169-11322515,11322570-11322612,11322669-11322749,
11323321-11323596,11325277-11325552
Length = 438
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 159 PLAGAPWSWPTAPADPHIVQCSNQALQR 76
PL+GAP P AP P + C AL +
Sbjct: 15 PLSGAPRRRPAAPTRPSALVCGTYALTK 42
>09_06_0150 -
21225086-21225511,21225775-21226125,21227180-21227718,
21227813-21227929,21228038-21228290
Length = 561
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +1
Query: 1 ANTQRCSPSYSSYQFFWSASTAGTCSLKSLVTTLNNMRISRSSG 132
A ++RC SYS + T+ CS + TT S S G
Sbjct: 9 AGSERCCGSYSPSADVSESETSSDCSAPTTTTTTRRFASSSSRG 52
>02_04_0256 + 21331396-21332268
Length = 290
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -3
Query: 158 RLPAHPGVGPLLRLILILFNVVTRLFNEHVPAVDADQK 45
RL AHPG P +RLIL+ + + LF A AD K
Sbjct: 143 RLLAHPGRLPPVRLILV--DSIASLFRADFDASPADLK 178
>11_04_0090 -
13391028-13391117,13391369-13391502,13391532-13391659,
13391684-13391718,13391719-13392159
Length = 275
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 132 PTAPADPHIVQCSNQALQRARTG 64
PTAP H + CS RA TG
Sbjct: 44 PTAPPKHHSLSCSGSQAPRATTG 66
>08_02_1583 + 28036125-28037030,28037411-28037656
Length = 383
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 159 PLAGAPWSWPTAPAD 115
PLA SWPT+PAD
Sbjct: 179 PLAAVVESWPTSPAD 193
>08_01_0759 - 7199085-7199414
Length = 109
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 168 LVHPLAGAPWSWPTAPADPHIVQCSNQALQRARTG 64
+V P A AP P+A A + C + ALQ R G
Sbjct: 31 VVLPPAAAPGEAPSADAAAFVRSCCDTALQADRDG 65
>08_01_0755 - 7159471-7160124
Length = 217
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 168 LVHPLAGAPWSWPTAPADPHIVQCSNQALQRARTG 64
+V P A AP P+A A + C + ALQ R G
Sbjct: 31 VVLPPAAAPGEAPSADAAAFVRSCCDTALQADRDG 65
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 189 SGAMVKVPITGNEHHRLSALGSVDLTNQM 275
S +MV++PIT N HH +++ S ++QM
Sbjct: 2017 STSMVEIPITSN-HHLSNSISSKTCSSQM 2044
>12_01_0344 +
2647044-2647238,2647452-2647553,2647789-2647911,
2648066-2648183,2649022-2649347
Length = 287
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 37 YQFFWSASTAGTCSLKSLVTTLNNMRISRSSGP 135
+ +WS + + C L+SL N R+S GP
Sbjct: 232 WYLWWSKAASNACQLQSLPLN-RNWRLSSDGGP 263
>02_05_0432 + 28936293-28936796,28937382-28939250
Length = 790
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 78 VEEPGYYIEQYEDQPEQWANSRV 146
V P + + E+ PEQW SR+
Sbjct: 97 VRSPELVVPELEELPEQWRRSRI 119
>02_01_0669 + 4974567-4974610,4975142-4975211,4975355-4975429
Length = 62
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 116 SAGAVGQLQGAPASGCTNCQLRRHL 190
++ ++GQ Q A A+G T C +RR++
Sbjct: 13 TSSSMGQGQQASANGVTACNIRRNI 37
>01_06_1077 +
34372486-34372697,34373476-34373547,34373892-34374059,
34374477-34374548,34374628-34374699,34375954-34376023
Length = 221
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +2
Query: 116 SAGAVGQLQGAPASGCTNCQLRRHLRCYGQGTYNWKRTSQAQCPW 250
+A V + GA + G LRR LR G +W T C W
Sbjct: 13 AAAVVVAMAGANSEGDALSALRRSLRDPGGVLQSWDPTLVNPCTW 57
>11_06_0346 -
22549699-22549721,22549857-22549999,22550100-22552175,
22552305-22552822
Length = 919
Score = 25.4 bits (53), Expect = 8.9
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +3
Query: 90 GYYIEQYEDQPEQ--WANSRVRRQAGALTVNSDGTSGAMVKVPITGNEHHRLSALGSVDL 263
G I Q DQ + W + + AGA + D + K+P T ++ L L ++DL
Sbjct: 601 GTLISQLPDQIVRIKWLRNLIVGAAGAGSGMIDSDQTVLTKIPETIHQLRYLKTLATIDL 660
Query: 264 T 266
+
Sbjct: 661 S 661
>09_04_0454 + 17722587-17722856,17723228-17723362
Length = 134
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -3
Query: 137 VGP--LLRLILILFNVVTRLFNEHV 69
VGP LRL+L FN++++ F H+
Sbjct: 43 VGPAVFLRLVLYSFNIISQAFAGHI 67
>07_03_0242 + 15700336-15700401,15700481-15700649,15701828-15702024
Length = 143
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 37 YQFFWSASTAGTCSLKSLVTTLNNMR-ISRSSGPTPGCAG 153
Y+ + SA T L + ++M IS+ PTPGC G
Sbjct: 21 YKDYGSAGRTDTNDSLRLASLWHSMHAISQQLSPTPGCEG 60
>07_03_0192 + 14935366-14935640,14935769-14935895,14936738-14936959
Length = 207
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 162 ALTVNSDGTSGAMVKVPITGNEHHRLSALGSV 257
A+ ++ GT+GA+ V + GN H R + + +V
Sbjct: 138 AVMASATGTAGAVAWVGLKGNSHTRWNKICNV 169
>02_05_1219 +
35011571-35011897,35012008-35013780,35013915-35014068,
35014158-35014801
Length = 965
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/41 (26%), Positives = 17/41 (41%)
Frame = -2
Query: 159 PLAGAPWSWPTAPADPHIVQCSNQALQRARTGC*RRPKELI 37
P +G W + + P+ CS+Q R R K+ I
Sbjct: 473 PTSGRSWDFLSRSGSPYSASCSSQTSHRREPSVVREAKKRI 513
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,760,177
Number of Sequences: 37544
Number of extensions: 166786
Number of successful extensions: 512
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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