Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K22
         (307 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   2.0  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   3.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   7.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   7.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   7.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   7.9  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
          releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 46 RTDTRNNLANIFV 8
          R DT+NNL N +V
Sbjct: 50 RQDTKNNLLNAYV 62


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 10/40 (25%), Positives = 15/40 (37%)
 Frame = +3

Query: 96  YIEQYEDQPEQWANSRVRRQAGALTVNSDGTSGAMVKVPI 215
           Y      + E W N+ V R       NS+  + + V   I
Sbjct: 264 YFHSLASRVESWVNTSVIRNYTLFNENSEAAARSFVPFSI 303


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 13/48 (27%), Positives = 17/48 (35%)
 Frame = +2

Query: 155 SGCTNCQLRRHLRCYGQGTYNWKRTSQAQCPWLRRSH*PNEVGSRYSW 298
           +G  N  +RRHL    QG  N        C +   S    +    Y W
Sbjct: 171 NGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQTAITYVW 218


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 13/48 (27%), Positives = 17/48 (35%)
 Frame = +2

Query: 155 SGCTNCQLRRHLRCYGQGTYNWKRTSQAQCPWLRRSH*PNEVGSRYSW 298
           +G  N  +RRHL    QG  N        C +   S    +    Y W
Sbjct: 171 NGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQTAITYVW 218


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 13/48 (27%), Positives = 17/48 (35%)
 Frame = +2

Query: 155 SGCTNCQLRRHLRCYGQGTYNWKRTSQAQCPWLRRSH*PNEVGSRYSW 298
           +G  N  +RRHL    QG  N        C +   S    +    Y W
Sbjct: 222 NGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQTAITYVW 269


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 13/48 (27%), Positives = 17/48 (35%)
 Frame = +2

Query: 155 SGCTNCQLRRHLRCYGQGTYNWKRTSQAQCPWLRRSH*PNEVGSRYSW 298
           +G  N  +RRHL    QG  N        C +   S    +    Y W
Sbjct: 171 NGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQTAITYVW 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,164
Number of Sequences: 438
Number of extensions: 1713
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)