Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_K21
(384 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 84 6e-18
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 83 1e-17
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 78 4e-16
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 28 0.44
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 1.8
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 25 3.1
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 24 7.1
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 24 7.1
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 24 9.4
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 24 9.4
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 24 9.4
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 84.2 bits (199), Expect = 6e-18
Identities = 43/97 (44%), Positives = 56/97 (57%)
Frame = +2
Query: 92 SKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKQRKEIFKRAEQYVKEYRIKERD 271
SK+ PES+ ++++A K+R+ I KRAE Y EYR ER+
Sbjct: 10 SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69
Query: 272 EIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPK 382
+I L R+AR GNYYVP E KL FVIRIRG+N + PK
Sbjct: 70 QIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPK 106
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 83.4 bits (197), Expect = 1e-17
Identities = 41/90 (45%), Positives = 54/90 (60%)
Frame = +2
Query: 113 PESVXXXXXXXXXXXXXXXQITLKRRSASIKQRKEIFKRAEQYVKEYRIKERDEIRLARQ 292
PES+ +++SA K+R+ I KRAE Y EYR ER++I LAR+
Sbjct: 16 PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75
Query: 293 ARNRGNYYVPGEAKLAFVIRIRGVNQVSPK 382
AR GNY+VP E KL FV+RIRG+N + PK
Sbjct: 76 ARAEGNYFVPHEPKLIFVVRIRGINNIPPK 105
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 78.2 bits (184), Expect = 4e-16
Identities = 35/68 (51%), Positives = 47/68 (69%)
Frame = +2
Query: 179 LKRRSASIKQRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 358
+ ++ A K RKE FKRAE ++ YR +ER+ IRL R A+N+G+ +VP E KL FVIRI
Sbjct: 37 IAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIA 96
Query: 359 GVNQVSPK 382
GV + PK
Sbjct: 97 GVKNMPPK 104
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 28.3 bits (60), Expect = 0.44
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +2
Query: 197 SIKQRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGN 310
S+K+ +EI ++ E+ +R+K ++ ++ + A N GN
Sbjct: 152 SLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 1.8
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +2
Query: 227 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 328
+A Q ++ + +RL N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 25.4 bits (53), Expect = 3.1
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 188 RSASIKQRKEIFKRAEQYVKEYRIKERDEIRLARQARN 301
R S K ++E +R +QYV E E+D+I + + ++
Sbjct: 67 RGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKD 104
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.2 bits (50), Expect = 7.1
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +2
Query: 182 KRRSASIKQRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGN 310
KR A ++ K+ +R ++ + E KE++ IRL + +++ N
Sbjct: 121 KRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKEN 163
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 24.2 bits (50), Expect = 7.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 196 SGTPLECDLKTASSECLPPFTVLQ 125
S PLE DL+ +ECL P ++Q
Sbjct: 187 SSDPLE-DLRLTLTECLNPINIVQ 209
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 23.8 bits (49), Expect = 9.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 170 EDGELGVPPSFYGASRLIPEQLA 102
ED L +PP G +L PE++A
Sbjct: 178 EDELLELPPETSGRKKLTPEEMA 200
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 23.8 bits (49), Expect = 9.4
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +3
Query: 255 ASRSVMKSDWQDRLVTVAIIMCPVKLN*HLSSVFVVSTKYHP 380
+S+ + + DWQD + ++I + + L S ++ YHP
Sbjct: 1119 SSQKLTRDDWQDWIRRISIELLKESPSSALRSCSTLAGIYHP 1160
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 23.8 bits (49), Expect = 9.4
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -1
Query: 288 LANLISSRSLMRYSLTYCSALLKISFLCL 202
+ +L+S +SL T+C+++L +SF L
Sbjct: 261 VVHLLSQKSLPYSLTTFCASILVLSFFQL 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,557,765
Number of Sequences: 5004
Number of extensions: 28446
Number of successful extensions: 83
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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