Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_K21
(384 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 79 1e-15
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 78 2e-15
02_05_0756 - 31534011-31534141,31534235-31535338,31535448-315356... 31 0.24
12_01_0661 + 5596739-5597047,5597125-5597703 28 2.2
10_08_0139 + 15145310-15145622,15145820-15145881,15145975-151463... 28 2.9
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 26 8.9
08_02_0590 + 19044193-19044364,19044464-19045047,19045085-190460... 26 8.9
08_02_0588 + 19036509-19039235 26 8.9
04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916 26 8.9
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 79.0 bits (186), Expect = 1e-15
Identities = 38/95 (40%), Positives = 56/95 (58%)
Frame = +2
Query: 98 KLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKQRKEIFKRAEQYVKEYRIKERDEI 277
K VPESV + L + +++ RK IF RA+QY +EY +E++ +
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66
Query: 278 RLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPK 382
+L R+AR +G +YV EAKL FV+RIRG+N + PK
Sbjct: 67 QLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPK 101
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 78.2 bits (184), Expect = 2e-15
Identities = 37/91 (40%), Positives = 54/91 (59%)
Frame = +2
Query: 110 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKQRKEIFKRAEQYVKEYRIKERDEIRLAR 289
VPESV + + + SI+ RK IF RA+QY +EY +E++ ++L R
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69
Query: 290 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPK 382
+AR +G +YV E KL FV+RIRG+N + PK
Sbjct: 70 EARMKGGFYVSPEEKLLFVVRIRGINAMHPK 100
>02_05_0756 -
31534011-31534141,31534235-31535338,31535448-31535692,
31535789-31535940,31536051-31536158
Length = 579
Score = 31.5 bits (68), Expect = 0.24
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -3
Query: 364 DTTNTDDKC*FSFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFP 209
D TN +KC G+ A++ ++S QS I +LDA ++ G ++ FP
Sbjct: 382 DPTNMAEKCKEGPQGNRFAASLNNVSFQSPAIDVLDAYYYSSGHGVYEEDFP 433
>12_01_0661 + 5596739-5597047,5597125-5597703
Length = 295
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 198 PLSRGKKSLREPNNMSKNTASRS 266
PL+R KK R NN +KN +SR+
Sbjct: 177 PLNRNKKRPRHANNANKNKSSRT 199
>10_08_0139 +
15145310-15145622,15145820-15145881,15145975-15146355,
15146413-15146929,15147031-15147161
Length = 467
Score = 27.9 bits (59), Expect = 2.9
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -3
Query: 364 DTTNTDDKC*FSFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFP 209
DTTN +K G+ A++ ++S +S I +LDA ++ G ++ FP
Sbjct: 269 DTTNATNKLCKGPQGNQFAASLNNVSFESPAIDVLDAYYYGSGRGVYEEDFP 320
>09_04_0087 + 14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 26.2 bits (55), Expect = 8.9
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 85 RGQ*EVASCSGISLEAP*KEGGTPSSPSSDHTQEAFRFH*AEERN 219
R + E CS +S++AP E P + S+ + +E H E+ +
Sbjct: 1303 RNENEAGPCSSMSVDAPMTEAPEPVNVSNHNIEEQNSCHDREQNS 1347
>08_02_0590 +
19044193-19044364,19044464-19045047,19045085-19046059,
19046219-19046605
Length = 705
Score = 26.2 bits (55), Expect = 8.9
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 52 GCGRE-KTCEG*RGQ*EVASCSGISLEAP*KEGG 150
GCGR+ KT G ASC G+S E +GG
Sbjct: 303 GCGRDVKTGSGLEFMAVDASCGGVSKEVVASDGG 336
>08_02_0588 + 19036509-19039235
Length = 908
Score = 26.2 bits (55), Expect = 8.9
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 52 GCGRE-KTCEG*RGQ*EVASCSGISLEAP*KEGG 150
GCGR+ KT G ASC G+S E +GG
Sbjct: 453 GCGRDVKTGSGLEFMAVDASCGGVSKEVVASDGG 486
>04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916
Length = 234
Score = 26.2 bits (55), Expect = 8.9
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +3
Query: 147 RHSELAVFRSHSRGVPLPLSRGKKSLREPNNMSKNTASRSVMKSDWQD 290
RH SH P G+K LR + + K+ SR K+ W+D
Sbjct: 97 RHHRHGHSHSHGHARPSTAGGGEKKLRASHILIKHEGSR--RKASWRD 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,572,828
Number of Sequences: 37544
Number of extensions: 202224
Number of successful extensions: 536
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -