Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_K21
(384 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal pro... 86 7e-18
AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like ... 28 2.0
Z73910-2|CAA98138.1| 248|Caenorhabditis elegans Hypothetical pr... 27 3.4
U05038-1|AAA61872.1| 248|Caenorhabditis elegans 14-3-3 protein ... 27 3.4
Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z81533-12|CAB04333.2| 356|Caenorhabditis elegans Hypothetical p... 27 6.0
Z81519-2|CAB04217.1| 468|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p... 27 6.0
Z66564-5|CAC42300.2| 198|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z66564-2|CAA91474.1| 248|Caenorhabditis elegans Hypothetical pr... 27 6.0
AC006631-2|AAL02500.1| 142|Caenorhabditis elegans Hypothetical ... 27 6.0
U55366-3|AAY86188.1| 118|Caenorhabditis elegans Hypothetical pr... 26 7.9
>AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7 protein.
Length = 244
Score = 86.2 bits (204), Expect = 7e-18
Identities = 39/97 (40%), Positives = 63/97 (64%)
Frame = +2
Query: 92 SKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKQRKEIFKRAEQYVKEYRIKERD 271
+KK+P VPE+V Q + + + +++ + FKRAE+YV+EYR +++
Sbjct: 4 TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKE 63
Query: 272 EIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPK 382
+RL R+A +G++YVP E K+AFV+RIRG+NQ+ PK
Sbjct: 64 GLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPK 100
>AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like
protein KLP-12 protein.
Length = 1609
Score = 28.3 bits (60), Expect = 2.0
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +2
Query: 203 KQRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGV 364
KQR++ K+ Q V R ++ D ARQA NRG + R+RGV
Sbjct: 775 KQREQFLKKTTQEVNALRKEKADAAATARQA-NRGTPRGGAAVTNSPARRVRGV 827
>Z73910-2|CAA98138.1| 248|Caenorhabditis elegans Hypothetical
protein M117.2 protein.
Length = 248
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 194 ASIKQRKEIFKRAEQYVKEYRIKERDEI 277
+SI+Q+ E ++ +Q KEYR+K E+
Sbjct: 65 SSIEQKTEGSEKKQQLAKEYRVKVEQEL 92
>U05038-1|AAA61872.1| 248|Caenorhabditis elegans 14-3-3 protein
protein.
Length = 248
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 194 ASIKQRKEIFKRAEQYVKEYRIKERDEI 277
+SI+Q+ E ++ +Q KEYR+K E+
Sbjct: 65 SSIEQKTEGSEKKQQLAKEYRVKVEQEL 92
>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical protein
C47E8.8 protein.
Length = 1675
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 227 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 358
R +Q VKE I++R +LA NY + ++ FV+ ++
Sbjct: 1149 RMKQNVKEECIRQRFMSKLAPIIHRLDNYSIEARVRIIFVLSVK 1192
>Z81533-12|CAB04333.2| 356|Caenorhabditis elegans Hypothetical
protein F36G9.1 protein.
Length = 356
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -3
Query: 277 DFITL-LDAVFFDILFGSLKDFFPLLNGS 194
DF++L FF ILFG+ +F L+NG+
Sbjct: 295 DFLSLGYRLAFFIILFGAFCEFVSLINGT 323
>Z81519-2|CAB04217.1| 468|Caenorhabditis elegans Hypothetical
protein F29C12.5 protein.
Length = 468
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 208 LLNGSGTPLECDLKTASSECL 146
L+ GSG P+E L A ECL
Sbjct: 240 LIEGSGKPMEIRLDIAEKECL 260
>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
protein C47E8.8 protein.
Length = 1675
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 227 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 358
R +Q VKE I++R +LA NY + ++ FV+ ++
Sbjct: 1149 RMKQNVKEECIRQRFMSKLAPIIHRLDNYSIEARVRIIFVLSVK 1192
>Z66564-5|CAC42300.2| 198|Caenorhabditis elegans Hypothetical
protein F52D10.3b protein.
Length = 198
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 194 ASIKQRKEIFKRAEQYVKEYRIKERDEIR 280
+SI+Q+ E ++ +Q KEYR K E+R
Sbjct: 65 SSIEQKTEGSEKKQQMAKEYREKVEKELR 93
>Z66564-2|CAA91474.1| 248|Caenorhabditis elegans Hypothetical
protein F52D10.3a protein.
Length = 248
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 194 ASIKQRKEIFKRAEQYVKEYRIKERDEIR 280
+SI+Q+ E ++ +Q KEYR K E+R
Sbjct: 65 SSIEQKTEGSEKKQQMAKEYREKVEKELR 93
>AC006631-2|AAL02500.1| 142|Caenorhabditis elegans Hypothetical
protein F27B3.7 protein.
Length = 142
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 216 KSLREPNNMSKNTASRSVMKSD 281
KS+ +P N+ NTA ++M SD
Sbjct: 39 KSMIDPQNLDDNTALEAIMNSD 60
>U55366-3|AAY86188.1| 118|Caenorhabditis elegans Hypothetical
protein F41F3.8 protein.
Length = 118
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 115 RNSWQLLTVLFTLHRFFLGRSLLFC 41
R+ W LL ++ T+H F LG S C
Sbjct: 2 RSLWMLLMLIGTIHAFLLGGSGCGC 26
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,809,138
Number of Sequences: 27780
Number of extensions: 168326
Number of successful extensions: 547
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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