Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K20
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   2.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.1  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   8.1  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 475 DGGPFDPWILLQQTRQYLLHL 537
           +G  FD  + +  TRQYLL L
Sbjct: 126 EGLQFDVLVKVDMTRQYLLQL 146


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 276 YQRYYGGNEFIDEIEILAQNRSLE 347
           Y R   GN   +E+E  A+N  LE
Sbjct: 245 YDRNNNGNLEREELEQFAENEDLE 268


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 69  NFNYTSTMNNKLLNGNLWETDPELFNLITKEK 164
           N+NY +  NN   N N      + +N+I  E+
Sbjct: 91  NYNYNNNYNNYNNNYNTNYKKLQYYNIINIEQ 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,071
Number of Sequences: 438
Number of extensions: 3773
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)