Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K18
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...   126   2e-30
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...   126   2e-30
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    28   0.76 
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    27   1.8  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   5.4  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.1  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    25   7.1  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  126 bits (303), Expect = 2e-30
 Identities = 53/80 (66%), Positives = 72/80 (90%)
 Frame = +3

Query: 210 SPKKVGDDIAKATSDWKGLKITVQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKN 389
           SPKKVG+DIAKAT DWKGL++TV+L +QNRQA +SVVPSA+AL+I+ALKEP RDRKK KN
Sbjct: 38  SPKKVGEDIAKATKDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKN 97

Query: 390 IKHNGNITMEDVIGIAKIMR 449
           + H+GN++++++I +A+ MR
Sbjct: 98  VAHSGNVSLDEIIEVARTMR 117


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  126 bits (303), Expect = 2e-30
 Identities = 53/80 (66%), Positives = 72/80 (90%)
 Frame = +3

Query: 210 SPKKVGDDIAKATSDWKGLKITVQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKN 389
           SPKKVG+DIAKAT DWKGL++TV+L +QNRQA +SVVPSA+AL+I+ALKEP RDRKK KN
Sbjct: 38  SPKKVGEDIAKATKDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKN 97

Query: 390 IKHNGNITMEDVIGIAKIMR 449
           + H+GN++++++I +A+ MR
Sbjct: 98  VAHSGNVSLDEIIEVARTMR 117


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 27.9 bits (59), Expect = 0.76
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +3

Query: 138 PANTSSDYLHNKFYHVINSN--FASQSP 215
           P N S+ +  N  YHV NSN   ASQ+P
Sbjct: 562 PKNLSTSWNQNMGYHVTNSNSELASQNP 589


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 13  RVLPGG-GWKEPATQDPMPVSLSRLLR 90
           R+ P G GWK P+  +P  + +S + R
Sbjct: 23  RIAPSGLGWKSPSLAEPFTLPISEIRR 49


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 1   LPTRRVLPGGGWKEPATQDPMPVSLS 78
           LP   V PGG    P  + P+P S+S
Sbjct: 156 LPETPVSPGGSLVHPLPRPPLPSSVS 181


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 132 CFPANTSSDYLHNKFYHVINSNFASQSPK---KVGDDI 236
           C  +++ ++YLH  FYH   S+    + K   ++GDD+
Sbjct: 200 CLNSSSLANYLHGCFYHNTLSHPYQDALKFIYEIGDDL 237


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +3

Query: 135 FPANTSSDYLHNKFYHVINSNFASQSPKKVGDDIAKATSDWK 260
           F  +  + Y  N  +H I  NF  Q    +GD      S WK
Sbjct: 482 FTTHAENGYYDNTIFHRIIKNFMIQGGDPLGDGTG-GESIWK 522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,791,120
Number of Sequences: 5004
Number of extensions: 31376
Number of successful extensions: 98
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)