Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_K18
(451 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1026 + 30214437-30214937 128 2e-30
02_05_0416 + 28791512-28792012 128 2e-30
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414 29 2.3
07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,266... 28 4.0
04_04_0154 - 23146445-23146535,23146689-23146795,23146933-231469... 28 4.0
04_04_0453 - 25346114-25346214,25346600-25346699,25346901-253469... 27 5.3
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 27 7.0
03_01_0626 + 4596022-4596462,4596549-4596667,4596745-4596801,459... 27 9.2
02_01_0422 - 3084940-3087072 27 9.2
01_06_0857 - 32507119-32507328,32507936-32508058,32508194-325082... 27 9.2
>04_04_1026 + 30214437-30214937
Length = 166
Score = 128 bits (310), Expect = 2e-30
Identities = 60/81 (74%), Positives = 75/81 (92%), Gaps = 1/81 (1%)
Frame = +3
Query: 210 SPKKVGDDIAKATS-DWKGLKITVQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQK 386
SPKK+G+DIAK T+ DWKGL++TV+L VQNRQA++SVVPSAAAL+I+ALKEP RDRKK K
Sbjct: 38 SPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVK 97
Query: 387 NIKHNGNITMEDVIGIAKIMR 449
NIKH+GNI+++DVI IA+IMR
Sbjct: 98 NIKHSGNISLDDVIEIARIMR 118
>02_05_0416 + 28791512-28792012
Length = 166
Score = 128 bits (309), Expect = 2e-30
Identities = 59/81 (72%), Positives = 75/81 (92%), Gaps = 1/81 (1%)
Frame = +3
Query: 210 SPKKVGDDIAKATS-DWKGLKITVQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQK 386
SPKK+G+DIAK T+ DWKGL++TV+L VQNRQA++SVVPSAAAL+I+ALKEP RDRKK K
Sbjct: 38 SPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVK 97
Query: 387 NIKHNGNITMEDVIGIAKIMR 449
NIKH+GNI+++DVI IA++MR
Sbjct: 98 NIKHSGNISLDDVIEIARVMR 118
>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
Length = 522
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 255 WKGLKITVQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQ 383
W + V V + + V+P+A A +IRA+ + P R++Q
Sbjct: 33 WYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75
>07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,
2669578-2669921,2670544-2670667,2671350-2671599,
2672486-2672571
Length = 943
Score = 27.9 bits (59), Expect = 4.0
Identities = 18/79 (22%), Positives = 31/79 (39%)
Frame = +3
Query: 165 HNKFYHVINSNFASQSPKKVGDDIAKATSDWKGLKITVQLIVQNRQAQISVVPSAAALII 344
HN + +N + A+ G + S W+ ++ I QAQ ++PS +A +
Sbjct: 863 HNNYCPWVNGHVAAACCINTGSSTSTGLSGWQLTVDALETIQSLAQAQNQIMPSDSAASL 922
Query: 345 RALKEPPRDRKKQKNIKHN 401
RK K H+
Sbjct: 923 YKDDHVAPSRKLLKRASHS 941
>04_04_0154 -
23146445-23146535,23146689-23146795,23146933-23146993,
23147070-23147221,23147306-23147383,23147696-23147809,
23147880-23147956,23148128-23148194,23148341-23148406,
23148528-23148651,23148733-23148825,23149446-23149594,
23149681-23149761,23150502-23150644,23150758-23150872
Length = 505
Score = 27.9 bits (59), Expect = 4.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 1 LPTRRVLPGGGWKEPATQDPMPV 69
+P R + GGGW+EP+ +PV
Sbjct: 7 IPRRGLFIGGGWREPSLGRRLPV 29
>04_04_0453 -
25346114-25346214,25346600-25346699,25346901-25346962,
25347053-25347186,25347320-25347408,25347667-25347696
Length = 171
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 308 LRLSVLHYQLDRDLETLPVTSGFS 237
L+ S+LHY +++LE L +GFS
Sbjct: 129 LKSSILHYLTEKELEELAKEAGFS 152
>12_02_0800 +
23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +3
Query: 162 LHNKFYHVINSNFASQSPKKVGDDIAKATSDWKGLKITVQLIVQNRQAQISVVPSAAAL 338
L+NK +V N P K ++ K+TS + K+ + +++ Q++++ + +A L
Sbjct: 562 LNNKARNVDARNITEPFPSKQAKEMQKSTSSKEDQKLPNEPVLEPSQSELTEIITAGKL 620
>03_01_0626 +
4596022-4596462,4596549-4596667,4596745-4596801,
4596921-4597159,4597261-4597379,4597488-4597574,
4597673-4597720
Length = 369
Score = 26.6 bits (56), Expect = 9.2
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -1
Query: 436 AMPMTSSIVIFPLCLMFFCFLRSRGGSLRALMISAAAEGTTEICACLFCTINWTVILRPF 257
AM S+ PL L F FL L+ M + A+ + + C+ I+W ++ R
Sbjct: 41 AMAGRVSVWFIPLHLSF-AFLFPLQRFLQCQMKNFASAAASGVALCVHVAISWLLVSRFR 99
Query: 256 QSLVALAMS 230
LV +A++
Sbjct: 100 FGLVGIALT 108
>02_01_0422 - 3084940-3087072
Length = 710
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 171 KFYHVINSNFASQSPKKVGDDIAKATSDWKGLKITVQLIVQN 296
K H+ ++N + + P +GD T + +G K+T +L N
Sbjct: 292 KELHICSNNLSGELPSSLGDCTKLVTINLRGNKLTGELAKVN 333
>01_06_0857 -
32507119-32507328,32507936-32508058,32508194-32508262,
32509963-32510238
Length = 225
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -1
Query: 343 MISAAAEGTTEICACLFCTINWTVILRPFQSLVALAMSSPT 221
M A A GT+ IC C ++ RP L LA S PT
Sbjct: 1 MAHAFAGGTSAICRCPHDPGRAALVSRPRHRLRVLASSLPT 41
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,860,089
Number of Sequences: 37544
Number of extensions: 245957
Number of successful extensions: 699
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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