Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K18
         (451 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.5  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   2.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   8.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.2  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 445 IILAMPMTSSIVIFPLCLMFFCFLRSR 365
           ++ A    SS VIF +  + F FLR+R
Sbjct: 6   VLQAESDVSSCVIFGVLFVLFSFLRTR 32


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 445 IILAMPMTSSIVIFPLCLMFFCFLRSR 365
           ++ A    SS VIF +  + F FLR+R
Sbjct: 6   VLQAESDVSSCVIFGVLFVLFSFLRTR 32


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 289 TINWTVILRPFQSLVALAMSSPTFFG 212
           +I   VIL  F  + AL++S P  FG
Sbjct: 11  SIRHAVILASFVWIYALSLSLPPLFG 36


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 308 LRLSVLHYQLDRDLETLPVTSGFSD 234
           L +++LH    +DL   P+T  F D
Sbjct: 129 LSVAILHRPDTKDLPVPPLTEVFPD 153


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 81  PRQGNWHRILSRGFLPSAT 25
           P  G W R +  GFL S +
Sbjct: 180 PVMGVWGRFVPEGFLTSCS 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,531
Number of Sequences: 438
Number of extensions: 2259
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)