Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_K17
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo... 31 0.13
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 26 2.8
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc... 26 2.8
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 26 3.7
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo... 26 3.7
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 25 6.5
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 25 6.5
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 25 6.5
SPBC215.11c |||aldo/keto reductase, unknown biological role|Schi... 25 6.5
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 25 6.5
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 25 8.6
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 8.6
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po... 25 8.6
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po... 25 8.6
>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 437
Score = 30.7 bits (66), Expect = 0.13
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +1
Query: 28 GGNLAHVVGFDESSVLMLGDKK--RTKESEALRATLELPSDSCIDFVQTVDGLVFSSTNY 201
GG L V G S +LGD+K R K S A+ + +P +F + ++G+ +S +
Sbjct: 168 GGQLEQVKGITYSLDALLGDEKLARLKRSHAIPSPDHIPHIRQEEFAK-LNGIHYSLQDL 226
Query: 202 LKLDGGKRKQFLQTAA 249
+ D G+R ++ A+
Sbjct: 227 MGHDHGERPSHVKDAS 242
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 2.8
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +1
Query: 67 SVLMLGDKKRTKESEALRATLELPSDSCIDFVQTVDGLVFSSTN 198
++L DK++ E + LR + + + +QT++ + F ST+
Sbjct: 59 NILSNDDKRKWHEKDYLRNQYSVQIEDVLQHLQTIEKIPFESTS 102
>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 364
Score = 26.2 bits (55), Expect = 2.8
Identities = 7/41 (17%), Positives = 25/41 (60%)
Frame = +3
Query: 351 EERSCSQTKVSV*KNEEAIDHICDDICYYYIFKIRARRFLC 473
++ + + K+++ ++ ++++H +C++Y + + A LC
Sbjct: 324 KDAAYQKLKLTIEESSKSVEHANQHVCFHYDYTLEADGSLC 364
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 25.8 bits (54), Expect = 3.7
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = -2
Query: 423 HHRYDRWPLHSFIHLL-SSASNFFPLFREASRANAEWIHVCTCAFQH*LFPRHLLHDSVR 247
H + + LH + ++ ++S+ ++A+ + E I V T +FQ L H+++
Sbjct: 677 HIMQENFSLHKALEVMRETSSDLDKQLKDATASQKELI-VQTSSFQKELVEERERHNAIS 735
Query: 246 CSLQELLSLASV*FQVVRRRKYETVDRLNEIN 151
LQE+ SL +V + + VD+ IN
Sbjct: 736 KRLQEIESLYRDRELLVTNLEDQLVDQTVTIN 767
>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 3.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -2
Query: 300 CAFQH*LFPRHLLHDSVRCSLQELLSLA---SV*FQVVRRRKYETVDR 166
C FQ FP HLL + +R S +E S A S + R +K T+ +
Sbjct: 224 CLFQVRPFPNHLLINWIRASEEEKASSADRLSSALHISRDKKLTTISK 271
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 25.0 bits (52), Expect = 6.5
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +2
Query: 98 LKNQKRSEQR*NSHLTPALISFRRSTVSYFXXXXXXXXXEARESSSCRLQRTL 256
LKNQKRSE+R +T +I + + F EA S L+ L
Sbjct: 738 LKNQKRSEKRDADEVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLELKL 790
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 25.0 bits (52), Expect = 6.5
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 172 DGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQKMTREQLVLECTCTYV 312
D + S+ N L L+ G KQFL+ AA ++ + T +YV
Sbjct: 672 DAFIESAKNILILEMGSDKQFLRRAAVQLLDSCKHLPDSVITTLSYV 718
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 429 RCHHRYDRWPLHSFIHLLSS 370
RC RYDR L+S+ LLSS
Sbjct: 855 RCMRRYDRIRLNSYKLLLSS 874
>SPBC215.11c |||aldo/keto reductase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 25.0 bits (52), Expect = 6.5
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 19 LKCGGNLAHVVGFDESSVLMLGDKKRTKESEALRATLELPSDSCIDFVQTVD 174
+K G + + +GF V G K+ EA ATL+ + I+F+ T D
Sbjct: 18 VKVGDMVVNRMGFGAMRVTGDGIWDEPKDKEACIATLKRLPELNINFIDTAD 69
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 25.0 bits (52), Expect = 6.5
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 393 NEEAIDHICDDICYYYIFKIRA 458
++EA+ +C + Y+Y F IRA
Sbjct: 674 SDEALARLCREFQYFYPFDIRA 695
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 24.6 bits (51), Expect = 8.6
Identities = 28/96 (29%), Positives = 36/96 (37%), Gaps = 4/96 (4%)
Frame = -3
Query: 371 LRATSFLSFVKQAERTRNGSTYVHVHSSTSCSLVIFCMIACAAVCRNCFLLPPSS-FK*F 195
L A+ FL F A N H SL FC ++ + L+PP F
Sbjct: 91 LNASCFLGFCVLAHDYVNLINARHFMIEHFLSLFAFCRTILFSLLTSFLLVPPPQFFHSE 150
Query: 194 VDENTRPSTV*TKSMQESDGSSNVA---LSASDSLV 96
E PS S+ S S VA L+AS +V
Sbjct: 151 AGERPTPSVGAPSSLASSMDSVRVAPSMLAASHQIV 186
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 24.6 bits (51), Expect = 8.6
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +1
Query: 91 KRTKESEALRATLELPSDSCIDFVQTV-DGLVFSSTNYLKLDGGKR-KQFLQTAAHAIMQ 264
K+T + + L + E + I ++ + D L S+ L+L ++ K LQT +Q
Sbjct: 134 KQTAQLQNLLSDKEKEVEKKITIIKDLKDALASSTHQVLELQHTQQEKASLQTNYEFELQ 193
Query: 265 KMTREQLVLECTCTYV 312
K+T++ +LE T++
Sbjct: 194 KLTQKNSILENNNTWL 209
>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 192 DELLETRRRQEKAVPADCSARYHAEDDEG 278
DE++E +R ++VP S ED+EG
Sbjct: 205 DEVIEDNKRLWESVPFAVSGGVSEEDEEG 233
>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 24.6 bits (51), Expect = 8.6
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +2
Query: 290 WNAHVHTWIHSAFALL----ASRKRGKKLLADESKCIKE 394
+N V W+ A A + S KR ++LL+ KC+KE
Sbjct: 310 FNLTVKEWVFIANAAINGSWISGKRKEELLSSVQKCVKE 348
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,918,877
Number of Sequences: 5004
Number of extensions: 34756
Number of successful extensions: 110
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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