Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K17
         (508 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X92669-1|CAA63356.1|  309|Homo sapiens p35 protein.                    32   1.3  
X87843-1|CAA61112.1|  309|Homo sapiens cdk7/cyclin H assembly fa...    32   1.3  
U61835-1|AAB05248.1|  267|Homo sapiens cyclin G1 interacting pro...    32   1.3  
CR450336-1|CAG29332.1|  309|Homo sapiens MNAT1 protein.                32   1.3  
BC000820-1|AAH00820.1|  309|Homo sapiens menage a trois homolog ...    32   1.3  
AY165512-1|AAN47195.1|  309|Homo sapiens menage a trois 1 (CAK a...    32   1.3  
Z19588-1|CAA79636.1|  387|Homo sapiens snoI protein.                   29   9.3  
X58288-1|CAA41226.1| 1452|Homo sapiens protein-tyrosine phosphat...    29   9.3  
X15219-1|CAA33289.1|  684|Homo sapiens protein ( Human sno oncog...    29   9.3  
X15217-1|CAA33287.1|  415|Homo sapiens protein ( Human sno oncog...    29   9.3  
U70730-1|AAB65850.1|  638|Homo sapiens SnoN2 protein.                  29   9.3  
BC059386-1|AAH59386.1|  684|Homo sapiens SKI-like oncogene protein.    29   9.3  
BC051651-1|AAH51651.1| 1390|Homo sapiens PTPRM protein protein.        29   9.3  
BC040543-1|AAH40543.1|  279|Homo sapiens PTPRM protein protein.        29   9.3  

>X92669-1|CAA63356.1|  309|Homo sapiens p35 protein.
          Length = 309

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
 Frame = +1

Query: 154 DFVQTVDGLVFSSTNYLKLDGGKRK-QFLQTAAHAIMQ----KMTREQLVLE 294
           DF++ V+ +VF+ TN + LD  K+K +  Q     ++Q    K+TREQ  LE
Sbjct: 97  DFLEEVEEIVFNLTNNVDLDNTKKKMEIYQKENKDVIQKNKLKLTREQEELE 148


>X87843-1|CAA61112.1|  309|Homo sapiens cdk7/cyclin H assembly
           factor protein.
          Length = 309

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
 Frame = +1

Query: 154 DFVQTVDGLVFSSTNYLKLDGGKRK-QFLQTAAHAIMQ----KMTREQLVLE 294
           DF++ V+ +VF+ TN + LD  K+K +  Q     ++Q    K+TREQ  LE
Sbjct: 97  DFLEEVEEIVFNLTNNVDLDNTKKKMEIYQKENKDVIQKNKLKLTREQEELE 148


>U61835-1|AAB05248.1|  267|Homo sapiens cyclin G1 interacting
           protein protein.
          Length = 267

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
 Frame = +1

Query: 154 DFVQTVDGLVFSSTNYLKLDGGKRK-QFLQTAAHAIMQ----KMTREQLVLE 294
           DF++ V+ +VF+ TN + LD  K+K +  Q     ++Q    K+TREQ  LE
Sbjct: 97  DFLEEVEEIVFNLTNNVDLDNTKKKMEIYQKENKDVIQKNKLKLTREQEELE 148


>CR450336-1|CAG29332.1|  309|Homo sapiens MNAT1 protein.
          Length = 309

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
 Frame = +1

Query: 154 DFVQTVDGLVFSSTNYLKLDGGKRK-QFLQTAAHAIMQ----KMTREQLVLE 294
           DF++ V+ +VF+ TN + LD  K+K +  Q     ++Q    K+TREQ  LE
Sbjct: 97  DFLEEVEEIVFNLTNNVDLDNTKKKMEIYQKENKDVIQKNKLKLTREQEELE 148


>BC000820-1|AAH00820.1|  309|Homo sapiens menage a trois homolog 1,
           cyclin H assembly factor (Xenopus laevis) protein.
          Length = 309

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
 Frame = +1

Query: 154 DFVQTVDGLVFSSTNYLKLDGGKRK-QFLQTAAHAIMQ----KMTREQLVLE 294
           DF++ V+ +VF+ TN + LD  K+K +  Q     ++Q    K+TREQ  LE
Sbjct: 97  DFLEEVEEIVFNLTNNVDLDNTKKKMEIYQKENKDVIQKNKLKLTREQEELE 148


>AY165512-1|AAN47195.1|  309|Homo sapiens menage a trois 1 (CAK
           assembly factor) protein.
          Length = 309

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
 Frame = +1

Query: 154 DFVQTVDGLVFSSTNYLKLDGGKRK-QFLQTAAHAIMQ----KMTREQLVLE 294
           DF++ V+ +VF+ TN + LD  K+K +  Q     ++Q    K+TREQ  LE
Sbjct: 97  DFLEEVEEIVFNLTNNVDLDNTKKKMEIYQKENKDVIQKNKLKLTREQEELE 148


>Z19588-1|CAA79636.1|  387|Homo sapiens snoI protein.
          Length = 387

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 18/68 (26%), Positives = 36/68 (52%)
 Frame = +1

Query: 109 EALRATLELPSDSCIDFVQTVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQKMTREQLV 288
           + L   L +PSDS  +  QTV  L   S +  ++ GG+++  L    ++++++ T +Q+ 
Sbjct: 116 QVLPGPLLIPSDSSTELTQTV--LEGESISCFQV-GGEKRLCLPQVLNSVLREFTLQQIN 172

Query: 289 LECTCTYV 312
             C   Y+
Sbjct: 173 TVCDELYI 180


>X58288-1|CAA41226.1| 1452|Homo sapiens protein-tyrosine phosphatase
            protein.
          Length = 1452

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 133  LPSDSCIDFVQTVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQKMTR-EQLVLECTCTY 309
            LP D C+ F+ T+DG   +  N   +D  K+        H +   +    +LVL+  CT 
Sbjct: 1223 LPPDRCLPFLITIDGESSNYINAALMDSYKQPSAFIVTQHPLPNTVKDFWRLVLDYHCTS 1282

Query: 310  V 312
            V
Sbjct: 1283 V 1283


>X15219-1|CAA33289.1|  684|Homo sapiens protein ( Human sno oncogene
           mRNA for snoN protein, ski-related. ).
          Length = 684

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 18/68 (26%), Positives = 36/68 (52%)
 Frame = +1

Query: 109 EALRATLELPSDSCIDFVQTVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQKMTREQLV 288
           + L   L +PSDS  +  QTV  L   S +  ++ GG+++  L    ++++++ T +Q+ 
Sbjct: 128 QVLPGPLLIPSDSSTELTQTV--LEGESISCFQV-GGEKRLCLPQVLNSVLREFTLQQIN 184

Query: 289 LECTCTYV 312
             C   Y+
Sbjct: 185 TVCDELYI 192


>X15217-1|CAA33287.1|  415|Homo sapiens protein ( Human sno oncogene
           mRNA for snoA protein, ski-related. ).
          Length = 415

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 18/68 (26%), Positives = 36/68 (52%)
 Frame = +1

Query: 109 EALRATLELPSDSCIDFVQTVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQKMTREQLV 288
           + L   L +PSDS  +  QTV  L   S +  ++ GG+++  L    ++++++ T +Q+ 
Sbjct: 128 QVLPGPLLIPSDSSTELTQTV--LEGESISCFQV-GGEKRLCLPQVLNSVLREFTLQQIN 184

Query: 289 LECTCTYV 312
             C   Y+
Sbjct: 185 TVCDELYI 192


>U70730-1|AAB65850.1|  638|Homo sapiens SnoN2 protein.
          Length = 638

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 18/68 (26%), Positives = 36/68 (52%)
 Frame = +1

Query: 109 EALRATLELPSDSCIDFVQTVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQKMTREQLV 288
           + L   L +PSDS  +  QTV  L   S +  ++ GG+++  L    ++++++ T +Q+ 
Sbjct: 128 QVLPGPLLIPSDSSTELTQTV--LEGESISCFQV-GGEKRLCLPQVLNSVLREFTLQQIN 184

Query: 289 LECTCTYV 312
             C   Y+
Sbjct: 185 TVCDELYI 192


>BC059386-1|AAH59386.1|  684|Homo sapiens SKI-like oncogene protein.
          Length = 684

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 18/68 (26%), Positives = 36/68 (52%)
 Frame = +1

Query: 109 EALRATLELPSDSCIDFVQTVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQKMTREQLV 288
           + L   L +PSDS  +  QTV  L   S +  ++ GG+++  L    ++++++ T +Q+ 
Sbjct: 128 QVLPGPLLIPSDSSTELTQTV--LEGESISCFQV-GGEKRLCLPQVLNSVLREFTLQQIN 184

Query: 289 LECTCTYV 312
             C   Y+
Sbjct: 185 TVCDELYI 192


>BC051651-1|AAH51651.1| 1390|Homo sapiens PTPRM protein protein.
          Length = 1390

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 133  LPSDSCIDFVQTVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQKMTR-EQLVLECTCTY 309
            LP D C+ F+ T+DG   +  N   +D  K+        H +   +    +LVL+  CT 
Sbjct: 1161 LPPDRCLPFLITIDGESSNYINAALMDSYKQPSAFIVTQHPLPNTVKDFWRLVLDYHCTS 1220

Query: 310  V 312
            V
Sbjct: 1221 V 1221


>BC040543-1|AAH40543.1|  279|Homo sapiens PTPRM protein protein.
          Length = 279

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 133 LPSDSCIDFVQTVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQKMTR-EQLVLECTCTY 309
           LP D C+ F+ T+DG   +  N   +D  K+        H +   +    +LVL+  CT 
Sbjct: 50  LPPDRCLPFLITIDGESSNYINAALMDSYKQPSAFIVTQHPLPNTVKDFWRLVLDYHCTS 109

Query: 310 V 312
           V
Sbjct: 110 V 110


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,793,157
Number of Sequences: 237096
Number of extensions: 1161905
Number of successful extensions: 3311
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3311
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4706589866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)