Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K16
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    30   0.17 
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    26   2.1  
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    25   4.9  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   6.5  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   6.5  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    24   8.6  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    24   8.6  

>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 29.9 bits (64), Expect = 0.17
 Identities = 19/62 (30%), Positives = 33/62 (53%)
 Frame = -3

Query: 245 TISHKTPPRLHDIESSTQV**IKENNCYMSD*DPAKKPTMKSLSDYNLTTINSY*KRVLT 66
           TI     P++HD E+ TQ+    +NN  +S    +  P++++ +D N  T++S      T
Sbjct: 269 TIPEDFEPQVHDHENQTQLNHHLDNNSSIS----SHNPSLETANDGNQETVSSSNSNYST 324

Query: 65  TR 60
           TR
Sbjct: 325 TR 326


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 396 GKIFNLVSALPSSDRPVAYPARTFHDAL 313
           GK + ++  +P SD P    ART H+A+
Sbjct: 607 GKQWEILGIMPCSDPPRHDTARTIHEAI 634


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -2

Query: 405 VNVGKIFNLVSALPSSDRPVAYPART 328
           V+ G I  LVS LPSSD  V Y   T
Sbjct: 205 VSAGTIPVLVSLLPSSDTDVQYYCTT 230


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 404  SMWVRFSILYQRYQAPTGRWPILLELSMTLCRHLRMYATRCL 279
            S  + F+    R QA   +W    ++S  L R  R+Y   CL
Sbjct: 1739 SRTIHFAEYKSRVQAVKKQWVDSTDISAQLERFFRVYKDECL 1780


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 404  SMWVRFSILYQRYQAPTGRWPILLELSMTLCRHLRMYATRCL 279
            S  + F+    R QA   +W    ++S  L R  R+Y   CL
Sbjct: 1739 SRTIHFAEYKSRVQAVKKQWVDSTDISAQLERFFRVYKDECL 1780


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 125 KSLSDYNLTTINSY*KRVLTTRRYKLCRYNTSIS 24
           + ++DY L  ++S  +RVLTT    L +   SIS
Sbjct: 299 QEVNDYGLVNVSSTGERVLTTDYNNLKKQWASIS 332


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +1

Query: 10   NNEPNDMLVLYRHNLYRLVVSTR 78
            +N+ N +  LYRH L ++++++R
Sbjct: 1661 SNDQNIVQYLYRHGLIKVLIASR 1683


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,678,710
Number of Sequences: 5004
Number of extensions: 30827
Number of successful extensions: 43
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)