Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K16
         (427 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0627 + 5451140-5451839,5452635-5452662,5452730-5452786,545...    28   2.7  
07_03_1647 + 28370226-28370369,28370452-28370611,28370704-283708...    28   3.6  
03_05_0042 + 20180151-20180468,20181595-20181665,20182929-201830...    27   4.8  

>08_01_0627 +
           5451140-5451839,5452635-5452662,5452730-5452786,
           5453205-5453874
          Length = 484

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 389 FSILYQRYQAPTGRWPILLELSMTLCRHL 303
           F IL + + A   ++P+L EL +TLC +L
Sbjct: 275 FDILDEGFSAAVKKFPLLEELELTLCDNL 303


>07_03_1647 +
           28370226-28370369,28370452-28370611,28370704-28370831,
           28372512-28372628,28372729-28372782,28372985-28373075,
           28373517-28373688,28374452-28374573,28374726-28374817,
           28375331-28375373,28375596-28375656,28376367-28376515,
           28376659-28376729,28376805-28376975,28377056-28377124,
           28377427-28377528,28377629-28377697,28378060-28378138,
           28378238-28378337,28378438-28378513,28378715-28378894,
           28379430-28379552,28379634-28379717,28380068-28380252,
           28380339-28380477,28380585-28380644,28380926-28381030,
           28381332-28381445
          Length = 1019

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -3

Query: 149 DPAKKPTMKSLSDYNLTTINSY*KRVL 69
           DP KK T KSL D  +TT N + KR+L
Sbjct: 679 DPKKKSTKKSLKD--VTTENEFEKRLL 703


>03_05_0042 +
           20180151-20180468,20181595-20181665,20182929-20183087,
           20183598-20183664,20183913-20184008,20184687-20184733,
           20185113-20185193,20185704-20185806,20185967-20186028,
           20187188-20187302,20193191-20195087,20195206-20195492
          Length = 1100

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 235 CEIVKLLCSS*VYYRRQRVAYILRCRQSVMESSSRIGHRPVGAW*R*YKIE 387
           CE+V + C    +YR  RVA  L   Q +  +  R+    V AW   YK+E
Sbjct: 469 CELVGMRCIE--HYRPHRVARQLSFDQDIPGTLPRVNSNWVAAW-ETYKME 516


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,418,660
Number of Sequences: 37544
Number of extensions: 181806
Number of successful extensions: 308
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)