Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K16
         (427 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024501-10|AAB70371.1|   62|Caenorhabditis elegans Hypothetical...    27   5.6  
AL021346-1|CAA16154.1|  823|Caenorhabditis elegans Hypothetical ...    27   7.4  
U70855-5|AAB09160.2|  886|Caenorhabditis elegans Hypothetical pr...    26   9.8  
U55857-10|AAA98035.2|  895|Caenorhabditis elegans Hypothetical p...    26   9.8  

>AF024501-10|AAB70371.1|   62|Caenorhabditis elegans Hypothetical
           protein F39E9.6 protein.
          Length = 62

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 149 DPAKKPTMKSLSDYNLTTINSY*KRVLTT 63
           DP KKP +K++SD    T NS   R+ TT
Sbjct: 10  DPKKKPELKTISD-KFPTSNSISDRLKTT 37


>AL021346-1|CAA16154.1|  823|Caenorhabditis elegans Hypothetical
           protein H37A05.1 protein.
          Length = 823

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 263 LEHNNLTISHKTPPRLHDIE 204
           LEH+N T  H TP  +HD E
Sbjct: 756 LEHSNFTHWHMTPKDVHDDE 775


>U70855-5|AAB09160.2|  886|Caenorhabditis elegans Hypothetical
           protein K08F11.2 protein.
          Length = 886

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -2

Query: 177 RKQLLHVRLRSRQKTNYEVVIRLQ 106
           RK+++ +R  S++KTN  +++R Q
Sbjct: 220 RKEIISIRKTSKRKTNENLILRKQ 243


>U55857-10|AAA98035.2|  895|Caenorhabditis elegans Hypothetical
           protein K08D10.1 protein.
          Length = 895

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -2

Query: 177 RKQLLHVRLRSRQKTNYEVVIRLQ 106
           RK+++ +R  S++KTN  +++R Q
Sbjct: 220 RKEIISIRKTSKRKTNENLILRKQ 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,409,863
Number of Sequences: 27780
Number of extensions: 177474
Number of successful extensions: 307
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)