Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K15
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    64   2e-11
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    28   0.94 
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    27   2.2  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    26   2.9  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.0  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   8.8  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   8.8  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
 Frame = +3

Query: 126 KISLKFTIDCTHPAEDSILDVGNFEKYLKERVKVEGKTNNLGNHVVIARD-KTKVAINA 299
           K+S K+ ID T    D I DV  FEKYL +R+KV+GKT NLG+ VV++R+  +K+A+ A
Sbjct: 7   KVSNKYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSREGSSKIAVIA 65



 Score = 29.1 bits (62), Expect = 0.41
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 370 DWLRVVASAHDSYELRYF 423
           DWLRVV++    YELRY+
Sbjct: 89  DWLRVVSTKKGVYELRYY 106


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 27.9 bits (59), Expect = 0.94
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 187 TSRMLSSAGCVQSMVNLRLIFLLAPLPRFCHLLLLSYQSSGV 62
           +S  LS   C+ S++NL +I + +      HLL   Y++S +
Sbjct: 288 SSLQLSEEACISSLLNLGMIKVFSLAGNCLHLLHTEYKNSSL 329


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 210 KERVKVEGKTNNLGNHVVIARDKTKV-AINAEHSLLKEVSQILDQALPQEKQ 362
           K+  K++ K N  G+     + K KV A+N +    K+  ++LD+ + QEKQ
Sbjct: 527 KDMAKLQNKLNMTGSEQQ-KKAKAKVKAMNKKLEKDKQSGKVLDEEIIQEKQ 577


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = +2

Query: 323 ISNT*PSVTSRKTIFGT-GSEWWLLHMT----HMSFATSTSMLIATMKTTRIKLFINKI 484
           I N     TS K +FG  G  WW+L +T    H +F   T      ++ + + +F +++
Sbjct: 180 ILNNGIKATSTKVLFGLLGLWWWMLFVTASFYHTTFEKCTGFFSGILEWSIVYVFSSRM 238


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 362  IFGTGSEWWLLHMTHMSFATSTSMLIATMKTTRIKLF 472
            +F   S WW L   +MS+   +  L  T+ ++  K F
Sbjct: 1499 VFSHFSSWWNLFSNNMSYPLRSGNLFPTLDSSPNKKF 1535


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 183  DVGNFEKYLKERVKVEGKTNNLGNH 257
            + GN +KY +  +KV GK ++   H
Sbjct: 955  EAGNLKKYDQPNLKVSGKNDSFVTH 979


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 120 KRKISLKFTIDCTHPAEDSILDVGNFEKYLKERVKVEGKTNNL 248
           K  +  K ++D  H  +   L   N +  +KE+ KV+G+ + L
Sbjct: 147 KEDLHKKLSVDNAHLIKQLDLLSSNMKTLMKEKTKVQGQRDLL 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,917,294
Number of Sequences: 5004
Number of extensions: 36213
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)