Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_K14
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0001 - 3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,6... 67 9e-12
11_01_0618 - 4941906-4942118,4942231-4942343,4942534-4942651,494... 54 7e-08
06_01_0452 + 3198475-3198962,3199062-3199191,3199332-3199497,319... 53 2e-07
02_04_0214 - 20976977-20977171,20977499-20977611,20978041-209781... 48 4e-06
04_03_1011 - 21708503-21708544,21708689-21708898,21709000-217091... 41 9e-04
03_02_0420 - 8298303-8299265,8299351-8299431,8299546-8299668,829... 30 1.7
10_08_0570 + 18851451-18851723,18851894-18851928,18851929-188519... 29 3.8
07_03_0489 - 18686806-18687681,18687816-18687830 29 3.8
05_01_0120 - 828834-831143 29 3.8
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 28 5.1
08_02_0980 + 23255992-23256408,23256480-23256517,23256606-232566... 27 8.9
07_03_1681 + 28624899-28625075,28625224-28625400,28625508-286256... 27 8.9
>02_01_0001 -
3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,
6419-6493,6619-6705,6873-6953,7021-7163,7262-7430,
7538-7667,7753-8255
Length = 577
Score = 67.3 bits (157), Expect = 9e-12
Identities = 33/77 (42%), Positives = 45/77 (58%)
Frame = +3
Query: 72 NEFGIDFSKGDKPVVAGRDVDGNKYVMKSEFSIENLVAFAKDLIGGKLEPFVKSEAVPES 251
N FGI + G + D + + E S+EN+ FA+D + KL PF KSE VPES
Sbjct: 361 NYFGITGQETTVLAYTGNE-DARNFFLDGEISVENIKRFAEDFLEEKLTPFYKSEPVPES 419
Query: 252 NDGPVKVAVGKNFKELV 302
N+G VK+ VGKN ++V
Sbjct: 420 NEGDVKIVVGKNLDQIV 436
>11_01_0618 -
4941906-4942118,4942231-4942343,4942534-4942651,
4942762-4942881,4942964-4943101,4943392-4943517,
4943659-4943847,4943951-4944238,4944344-4944374,
4945014-4945216
Length = 512
Score = 54.4 bits (125), Expect = 7e-08
Identities = 30/92 (32%), Positives = 48/92 (52%)
Frame = +3
Query: 27 VNFAISDKDDFVHELNEFGIDFSKGDKPVVAGRDVDGNKYVMKSEFSIENLVAFAKDLIG 206
+ F I D + FG+ + P++ +D + K+ +K+ + +V++ K+
Sbjct: 310 IKFLIGDIEASQGAFQYFGL--REDQVPLIIIQDGESKKF-LKAHVEPDQIVSWLKEYFD 366
Query: 207 GKLEPFVKSEAVPESNDGPVKVAVGKNFKELV 302
GKL PF KSE +PE ND PVKV V N + V
Sbjct: 367 GKLSPFRKSEPIPEVNDEPVKVVVADNVHDFV 398
>06_01_0452 +
3198475-3198962,3199062-3199191,3199332-3199497,
3199765-3199883,3200056-3200136,3200236-3200322,
3200644-3200715,3200791-3200859,3201349-3201426,
3201540-3201680,3202333-3202386,3202465-3202581
Length = 533
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +3
Query: 102 DKPVVAGRDVD-GNKYVMKSEFSIENLVAFAKDLIGGKLEPFVKSEAVPESNDGPVKVAV 278
+KP V D G KY+M++E + +NL F L+ G L P+ +SE VPE GP++ V
Sbjct: 354 EKPTVTAFDTSKGTKYLMEAEINAKNLQDFCLSLLEGTLPPYFRSEPVPEEK-GPIEKVV 412
Query: 279 GKNFKELV 302
G+ F V
Sbjct: 413 GRTFDSSV 420
>02_04_0214 -
20976977-20977171,20977499-20977611,20978041-20978158,
20978585-20978701,20978836-20978973,20979193-20979318,
20979827-20980015,20980539-20980863,20980977-20981134
Length = 492
Score = 48.4 bits (110), Expect = 4e-06
Identities = 30/94 (31%), Positives = 47/94 (50%)
Frame = +3
Query: 21 SNVNFAISDKDDFVHELNEFGIDFSKGDKPVVAGRDVDGNKYVMKSEFSIENLVAFAKDL 200
+N++F I D FG+ + + P+V +KY+ K + ++ + K+
Sbjct: 295 NNISFLIGDVTASQGAFQYFGL--KESEVPLVFIL-ASKSKYI-KPTVEPDQILPYLKEF 350
Query: 201 IGGKLEPFVKSEAVPESNDGPVKVAVGKNFKELV 302
G L P VKSE +PE ND PVK V N +E+V
Sbjct: 351 TEGTLAPHVKSEPIPEVNDQPVKTVVADNLREVV 384
>04_03_1011 -
21708503-21708544,21708689-21708898,21709000-21709112,
21709232-21709349,21709386-21709412,21709671-21709808,
21710069-21710194,21710279-21710467,21710598-21710885,
21710937-21711024,21711120-21711298
Length = 505
Score = 40.7 bits (91), Expect = 9e-04
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +3
Query: 207 GKLEPFVKSEAVPESNDGPVKVAVGKNFKELV 302
G L P+VKSE +P+ ND PVKV V N ++V
Sbjct: 347 GNLTPYVKSEPIPKVNDQPVKVVVADNIDDIV 378
>03_02_0420 -
8298303-8299265,8299351-8299431,8299546-8299668,
8299815-8299983,8300108-8300478
Length = 568
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 179 GRFRERPHRW*TRAFRQIRSGAGE*RWPS*SGSR 280
G++R+ P+R A+R I +GA + R P +G+R
Sbjct: 463 GQYRDPPYRRDPAAYRDINAGAAQRRQPDGAGAR 496
>10_08_0570 +
18851451-18851723,18851894-18851928,18851929-18851998,
18852089-18852187,18852276-18852365,18852430-18852920,
18853015-18853102,18853204-18853245,18853548-18853574,
18853817-18853996,18854249-18854416,18854501-18854710
Length = 590
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/69 (30%), Positives = 30/69 (43%)
Frame = +3
Query: 204 GGKLEPFVKSEAVPESNDGPVKVAVGKNFKELVTGRRGRR*PVSVHKHVREDRLFIACRS 383
GG++ P +S P G + ++ EL+ G R R + VR RL R
Sbjct: 201 GGRVLPCPRSTPNPNLVAGSRILPRPRSTSELIAGDRILRRELVTGGRVRRPRLSRRPRP 260
Query: 384 VRRRSKPIP 410
RR S P+P
Sbjct: 261 PRRSSSPVP 269
>07_03_0489 - 18686806-18687681,18687816-18687830
Length = 296
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 329 RSSPSTPAGDQLLEVLTDCHFNWAIVTLR 243
RSS P GD L+ ++TD H+N+ ++ R
Sbjct: 96 RSSSCCPDGDHLVAIMTD-HYNFPLILCR 123
>05_01_0120 - 828834-831143
Length = 769
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = -1
Query: 223 KGSSLPPMRSFAKATRFSMLNSDFMT---YLFPSTSRPATTGLSPLEKSIPNSFNSWTKS 53
+ S+ PP S + + S ++S + + L PSTS P + GLSP + ++ ++S
Sbjct: 496 EASTSPPFLSPSSLSSDSSISSKYSSDSPSLSPSTSSPTSLGLSPASSNFSHTLVPSSRS 555
Query: 52 SL 47
L
Sbjct: 556 PL 557
>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = -1
Query: 232 DLTKGSSLPPMRSFAKATRFSM--LNSDFMTYLF-PSTSRPATTGLSPLEKSIPNSFNSW 62
D G S R+ A T+ + N + Y+F PS PAT L L S+PNS
Sbjct: 2323 DFADGGSSYSNRTAANNTKDAPKECNKEAKAYMFAPSGHTPATELLVKLNASVPNSGTET 2382
Query: 61 TKSSLS 44
T+ S
Sbjct: 2383 TRRDWS 2388
>08_02_0980 +
23255992-23256408,23256480-23256517,23256606-23256654,
23256787-23256848,23256876-23256938,23256939-23257599
Length = 429
Score = 27.5 bits (58), Expect = 8.9
Identities = 22/71 (30%), Positives = 31/71 (43%)
Frame = +3
Query: 198 LIGGKLEPFVKSEAVPESNDGPVKVAVGKNFKELVTGRRGRR*PVSVHKHVREDRLFIAC 377
+IGG++ P +S P G + ++ ELV G R + VR L +
Sbjct: 241 VIGGRVLPRPRSTPNPNLVAGSRILPHPRSISELVAGDCVLRRELVTSGRVRRPCLNMRP 300
Query: 378 RSVRRRSKPIP 410
RS RR S P P
Sbjct: 301 RSPRRSSSPAP 311
>07_03_1681 +
28624899-28625075,28625224-28625400,28625508-28625673,
28625761-28626152
Length = 303
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -1
Query: 166 LNSDFMTYLFPSTSRPATTG---LSPLEKSIPNSFNS 65
++S F T L + RP +G L+PL+ + PN+F+S
Sbjct: 196 IDSSFATALKANCPRPTGSGDSNLAPLDTTTPNAFDS 232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,489,797
Number of Sequences: 37544
Number of extensions: 325059
Number of successful extensions: 1163
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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